The gene/protein map for NC_009636 is currently unavailable.
Definition Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession NC_009636
Length 3,781,904

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The map label for this gene is rbsA [H]

Identifier: 150395332

GI number: 150395332

Start: 115462

End: 116244

Strand: Direct

Name: rbsA [H]

Synonym: Smed_0104

Alternate gene names: 150395332

Gene position: 115462-116244 (Clockwise)

Preceding gene: 150395331

Following gene: 150395333

Centisome position: 3.05

GC content: 64.5

Gene sequence:

>783_bases
ATGGCACAGGAACCCATTCTCACCGCCCGCGGCCTCGTTAAGCGCTATGGCCGCGTCACCGCCCTCGACCGCGCCGATTT
CGACCTCTATCCCGGTGAAATCCTTGCGGTGATCGGCGACAACGGCGCCGGCAAGTCCTCAATGATCAAGGCGATCTCCG
GTGCGATGACGCCCGACCAGGGGGAAATTCGCCTCGAAGGCAAGCGCGTCCACTTCCGCTCGCCGATGGAAGCGAGGAAA
GCCGGCATCGAAACCGTGTACCAGAACCTCGCACTGTCTCCGGCGCTGTCGATCGCCGACAACATGTTTCTCGGCCGGGA
AATCCGCAAGCCGGGGATCATGGGCAAGTGGTTCCGCTCATTGGACCGTGCGGCCATGGAGAAGCAGGCGCGGGAAAAGC
TCACCGAACTCGGCCTGATGACGATCCAGAACATCAACCAGGCCGTCGAGACGCTCTCCGGCGGGCAGCGGCAGGGCGTC
GCGGTCGCGCGGGCTGCCGCCTTCGGCTCCAAGGTCGTCATCATGGACGAGCCGACGGCGGCGCTCGGCGTCAAGGAAAG
CCGGCGCGTGCTGGAACTGATCCTCGACGTGCGCGGCCGGGGCCTGCCGATCGTGCTGATCTCTCACAACATGCCGCATG
TGTTCGAAGTCGCGGACCGCATCCACATCCATAGGCTCGGCCGCCGGCTCTGCATCATCAATCCGAAGGATTACACCATG
TCGGATGCGGTGGCTTTCATGACCGGCGCGAAGGAGCCGCCGCGCGAGGCGATTGCGGCATGA

Upstream 100 bases:

>100_bases
GCCTCATGGGCACCGACCCGCAATGGACCTATCTCCTGATCGGCTTGCTGATCATCATCGCCGTCGCAATCGATCAGTGG
ATCAGAAAGGTAGCAGCCTG

Downstream 100 bases:

>100_bases
GCATCAAATCCCTTGTGGATGAAATCCTGAAGCGGGCGGCTCAGTCCGGCCGCTTCATTGCCGCCATAGCCGGTCCGCCC
GGCGCAGGTAAGTCCACGCT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MAQEPILTARGLVKRYGRVTALDRADFDLYPGEILAVIGDNGAGKSSMIKAISGAMTPDQGEIRLEGKRVHFRSPMEARK
AGIETVYQNLALSPALSIADNMFLGREIRKPGIMGKWFRSLDRAAMEKQAREKLTELGLMTIQNINQAVETLSGGQRQGV
AVARAAAFGSKVVIMDEPTAALGVKESRRVLELILDVRGRGLPIVLISHNMPHVFEVADRIHIHRLGRRLCIINPKDYTM
SDAVAFMTGAKEPPREAIAA

Sequences:

>Translated_260_residues
MAQEPILTARGLVKRYGRVTALDRADFDLYPGEILAVIGDNGAGKSSMIKAISGAMTPDQGEIRLEGKRVHFRSPMEARK
AGIETVYQNLALSPALSIADNMFLGREIRKPGIMGKWFRSLDRAAMEKQAREKLTELGLMTIQNINQAVETLSGGQRQGV
AVARAAAFGSKVVIMDEPTAALGVKESRRVLELILDVRGRGLPIVLISHNMPHVFEVADRIHIHRLGRRLCIINPKDYTM
SDAVAFMTGAKEPPREAIAA
>Mature_259_residues
AQEPILTARGLVKRYGRVTALDRADFDLYPGEILAVIGDNGAGKSSMIKAISGAMTPDQGEIRLEGKRVHFRSPMEARKA
GIETVYQNLALSPALSIADNMFLGREIRKPGIMGKWFRSLDRAAMEKQAREKLTELGLMTIQNINQAVETLSGGQRQGVA
VARAAAFGSKVVIMDEPTAALGVKESRRVLELILDVRGRGLPIVLISHNMPHVFEVADRIHIHRLGRRLCIINPKDYTMS
DAVAFMTGAKEPPREAIAA

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=242, Percent_Identity=30.1652892561983, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI105990541, Length=234, Percent_Identity=28.6324786324786, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI150417984, Length=234, Percent_Identity=30.3418803418803, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI47078218, Length=244, Percent_Identity=27.4590163934426, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI45446740, Length=244, Percent_Identity=27.4590163934426, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI27881501, Length=226, Percent_Identity=26.5486725663717, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI30795238, Length=226, Percent_Identity=26.5486725663717, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI153792144, Length=189, Percent_Identity=27.5132275132275, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI116734710, Length=220, Percent_Identity=27.7272727272727, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI31657092, Length=232, Percent_Identity=23.2758620689655, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27477115, Length=210, Percent_Identity=27.6190476190476, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI27262624, Length=220, Percent_Identity=28.1818181818182, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI27262626, Length=220, Percent_Identity=28.1818181818182, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI157502203, Length=202, Percent_Identity=27.2277227722772, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI157502201, Length=202, Percent_Identity=27.2277227722772, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI21536378, Length=193, Percent_Identity=26.4248704663212, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI27436953, Length=226, Percent_Identity=26.5486725663717, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI42741659, Length=197, Percent_Identity=28.9340101522843, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI156105685, Length=193, Percent_Identity=30.0518134715026, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI190343023, Length=202, Percent_Identity=28.7128712871287, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI11967971, Length=203, Percent_Identity=26.6009852216749, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI48995001, Length=225, Percent_Identity=38.6666666666667, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1790190, Length=248, Percent_Identity=35.8870967741936, Blast_Score=151, Evalue=3e-38,
Organism=Escherichia coli, GI1788472, Length=248, Percent_Identity=34.6774193548387, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1788210, Length=224, Percent_Identity=33.4821428571429, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1790525, Length=245, Percent_Identity=31.4285714285714, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=33.1838565022422, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788897, Length=239, Percent_Identity=32.2175732217573, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789991, Length=247, Percent_Identity=29.9595141700405, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1789864, Length=239, Percent_Identity=27.6150627615063, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI145693107, Length=261, Percent_Identity=32.5670498084291, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1789962, Length=243, Percent_Identity=31.6872427983539, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787712, Length=235, Percent_Identity=31.4893617021277, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87081709, Length=248, Percent_Identity=26.6129032258064, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI87081791, Length=238, Percent_Identity=30.672268907563, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790544, Length=228, Percent_Identity=29.8245614035088, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1790162, Length=239, Percent_Identity=28.8702928870293, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786803, Length=238, Percent_Identity=26.0504201680672, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1787500, Length=213, Percent_Identity=29.5774647887324, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=29.2237442922374, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI48994997, Length=233, Percent_Identity=27.8969957081545, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=31.1004784688995, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786872, Length=238, Percent_Identity=29.4117647058824, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788225, Length=229, Percent_Identity=29.2576419213974, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1787758, Length=219, Percent_Identity=28.7671232876712, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1789672, Length=218, Percent_Identity=26.605504587156, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=27.6315789473684, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788761, Length=211, Percent_Identity=30.3317535545024, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1790534, Length=215, Percent_Identity=30.6976744186047, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789032, Length=236, Percent_Identity=26.271186440678, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1786563, Length=206, Percent_Identity=30.5825242718447, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=27.1028037383178, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790467, Length=249, Percent_Identity=24.8995983935743, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787105, Length=224, Percent_Identity=27.2321428571429, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1788450, Length=216, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082267, Length=208, Percent_Identity=30.2884615384615, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787089, Length=240, Percent_Identity=28.3333333333333, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=27.1604938271605, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787164, Length=213, Percent_Identity=27.2300469483568, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788506, Length=228, Percent_Identity=27.1929824561404, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786345, Length=222, Percent_Identity=26.1261261261261, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787547, Length=234, Percent_Identity=24.7863247863248, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790739, Length=221, Percent_Identity=24.8868778280543, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI48994943, Length=231, Percent_Identity=25.1082251082251, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87081782, Length=235, Percent_Identity=26.8085106382979, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786703, Length=221, Percent_Identity=26.6968325791855, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786253, Length=191, Percent_Identity=28.7958115183246, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87082268, Length=209, Percent_Identity=23.9234449760766, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994883, Length=234, Percent_Identity=25.6410256410256, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI2367384, Length=254, Percent_Identity=27.5590551181102, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789963, Length=219, Percent_Identity=25.5707762557078, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787759, Length=246, Percent_Identity=27.6422764227642, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786319, Length=206, Percent_Identity=26.6990291262136, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=216, Percent_Identity=27.3148148148148, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788053, Length=214, Percent_Identity=26.1682242990654, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789873, Length=205, Percent_Identity=28.2926829268293, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788540, Length=193, Percent_Identity=29.5336787564767, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787113, Length=174, Percent_Identity=32.183908045977, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787112, Length=195, Percent_Identity=29.7435897435897, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1786981, Length=197, Percent_Identity=28.9340101522843, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=203, Percent_Identity=26.1083743842365, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71992290, Length=214, Percent_Identity=28.5046728971963, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115534520, Length=219, Percent_Identity=29.6803652968037, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=209, Percent_Identity=30.622009569378, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=222, Percent_Identity=25.6756756756757, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=198, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=221, Percent_Identity=28.9592760180996, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=212, Percent_Identity=27.8301886792453, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=215, Percent_Identity=27.906976744186, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=221, Percent_Identity=28.5067873303167, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=196, Percent_Identity=29.5918367346939, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24666092, Length=223, Percent_Identity=27.3542600896861, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221512771, Length=220, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28574150, Length=228, Percent_Identity=26.7543859649123, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI116007328, Length=228, Percent_Identity=26.7543859649123, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24659289, Length=211, Percent_Identity=27.0142180094787, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571209, Length=266, Percent_Identity=25.5639097744361, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643674, Length=226, Percent_Identity=26.9911504424779, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28574533, Length=207, Percent_Identity=27.536231884058, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI17136662, Length=199, Percent_Identity=28.1407035175879, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI17136592, Length=238, Percent_Identity=26.4705882352941, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574744, Length=204, Percent_Identity=27.9411764705882, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573573, Length=225, Percent_Identity=25.3333333333333, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28573571, Length=225, Percent_Identity=25.3333333333333, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574259, Length=232, Percent_Identity=27.5862068965517, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24648314, Length=225, Percent_Identity=25.3333333333333, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 28467; Mature: 28335

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MAQEPILTARGLVKRYGRVTALDRADFDLYPGEILAVIGDNGAGKSSMIKAISGAMTPDQ
CCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCC
GEIRLEGKRVHFRSPMEARKAGIETVYQNLALSPALSIADNMFLGREIRKPGIMGKWFRS
CCEEEECCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
LDRAAMEKQAREKLTELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVVIMDEPTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCCH
ALGVKESRRVLELILDVRGRGLPIVLISHNMPHVFEVADRIHIHRLGRRLCIINPKDYTM
HHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCCH
SDAVAFMTGAKEPPREAIAA
HHHHHHHHCCCCCCHHHHCC
>Mature Secondary Structure 
AQEPILTARGLVKRYGRVTALDRADFDLYPGEILAVIGDNGAGKSSMIKAISGAMTPDQ
CCCCCHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCC
GEIRLEGKRVHFRSPMEARKAGIETVYQNLALSPALSIADNMFLGREIRKPGIMGKWFRS
CCEEEECCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
LDRAAMEKQAREKLTELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVVIMDEPTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCCH
ALGVKESRRVLELILDVRGRGLPIVLISHNMPHVFEVADRIHIHRLGRRLCIINPKDYTM
HHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCCH
SDAVAFMTGAKEPPREAIAA
HHHHHHHHCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]