Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 150395331

GI number: 150395331

Start: 114380

End: 115462

Strand: Direct

Name: rbsC [H]

Synonym: Smed_0103

Alternate gene names: 150395331

Gene position: 114380-115462 (Clockwise)

Preceding gene: 150395330

Following gene: 150395332

Centisome position: 3.02

GC content: 59.93

Gene sequence:

>1083_bases
ATGGGCGATTCAACCACAACCGCGCAACCATCCCAGGATTTCGAAAAGGTTCTGGTCGACAGTTCGACAGAAGTCGCGTC
TTTCGATTCACACCATAAGACGCCACTGCAGCATCTTCAGCATTTCCTGCATTCAAACCCGGCCGCCGTACCGTTGATCG
TGCTGATCCTGTCGGTGATCATTTTCGGCGTTCTTCTCGGTGGCAAATTCTTTTCCGCCTTCACCATGACGCTGATCCTG
CAGCAGATGGCGATTGTCGGCATCGTCGGAGCGGCCCAGACGCTGGTGATTCTGACCGCGGGTATCGATCTTTCCGTCGG
TGCGATCATGGTGCTGTCATCTGTCGTCATGGGGCAGTTCGCCTTCCGCTATGGCGTGCCGCCTGTGCTTTCCGTGCTCT
GCGGCCTCGGTGTAGGAGCGCTCTGCGGCTACATAAACGGAACCCTCGTCGCACGCATGAAGCTGCCGCCCTTCATTGTG
ACGCTGGGCATGTGGCAGATCGTGCTCGCTTCGAATTTCCTCTATTCGGCCAATGAGACGATCCGGGCTCAGGCGATTGC
CGCCGACGCTCCGATCCTGCAGTTCTTCGGCCAGAACTTCCGCATCGGCAATGCCGTCTTCACCTACGGTGTGGTCGCCA
TGGTGCTCCTCGTCGCTCTCCTCTGGTACGCGCTGAACCGCACGGCGTGGGGGCGCTATGTCTATGCCGTCGGCGACGAT
CCCGAGGCCGCCCAGCTGTCCGGTGTCAACGTCAAACGCATGCTCATCTCCATCTATACGCTCTCCGGTCTGATCTGCGC
CCTTGCCGGTTGGGCTCTCATCGGCCGCATCGGCTCGGTGTCACCGACGGCCGGGCAGTTCGCGAATATCGAATCGATCA
CCGCGGTGGTGATCGGCGGCATCTCGCTCTTCGGCGGCCGCGGTTCCATAATGGGCATGCTCTTCGGCGCGCTGATCGTC
GGCGTCTTCTCGCTGGGCTTGCGCCTCATGGGCACCGACCCGCAATGGACCTATCTCCTGATCGGCTTGCTGATCATCAT
CGCCGTCGCAATCGATCAGTGGATCAGAAAGGTAGCAGCCTGA

Upstream 100 bases:

>100_bases
ATCGACGAGAGCGTCCGAGGCGTGCCGTATGTATCGGCAACTGTGCATCCTGTAGCAATGCGCCCCTCTCTTGAGAGCGG
GGTTCACGGGAGGAGTCTCC

Downstream 100 bases:

>100_bases
TGGCACAGGAACCCATTCTCACCGCCCGCGGCCTCGTTAAGCGCTATGGCCGCGTCACCGCCCTCGACCGCGCCGATTTC
GACCTCTATCCCGGTGAAAT

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MGDSTTTAQPSQDFEKVLVDSSTEVASFDSHHKTPLQHLQHFLHSNPAAVPLIVLILSVIIFGVLLGGKFFSAFTMTLIL
QQMAIVGIVGAAQTLVILTAGIDLSVGAIMVLSSVVMGQFAFRYGVPPVLSVLCGLGVGALCGYINGTLVARMKLPPFIV
TLGMWQIVLASNFLYSANETIRAQAIAADAPILQFFGQNFRIGNAVFTYGVVAMVLLVALLWYALNRTAWGRYVYAVGDD
PEAAQLSGVNVKRMLISIYTLSGLICALAGWALIGRIGSVSPTAGQFANIESITAVVIGGISLFGGRGSIMGMLFGALIV
GVFSLGLRLMGTDPQWTYLLIGLLIIIAVAIDQWIRKVAA

Sequences:

>Translated_360_residues
MGDSTTTAQPSQDFEKVLVDSSTEVASFDSHHKTPLQHLQHFLHSNPAAVPLIVLILSVIIFGVLLGGKFFSAFTMTLIL
QQMAIVGIVGAAQTLVILTAGIDLSVGAIMVLSSVVMGQFAFRYGVPPVLSVLCGLGVGALCGYINGTLVARMKLPPFIV
TLGMWQIVLASNFLYSANETIRAQAIAADAPILQFFGQNFRIGNAVFTYGVVAMVLLVALLWYALNRTAWGRYVYAVGDD
PEAAQLSGVNVKRMLISIYTLSGLICALAGWALIGRIGSVSPTAGQFANIESITAVVIGGISLFGGRGSIMGMLFGALIV
GVFSLGLRLMGTDPQWTYLLIGLLIIIAVAIDQWIRKVAA
>Mature_359_residues
GDSTTTAQPSQDFEKVLVDSSTEVASFDSHHKTPLQHLQHFLHSNPAAVPLIVLILSVIIFGVLLGGKFFSAFTMTLILQ
QMAIVGIVGAAQTLVILTAGIDLSVGAIMVLSSVVMGQFAFRYGVPPVLSVLCGLGVGALCGYINGTLVARMKLPPFIVT
LGMWQIVLASNFLYSANETIRAQAIAADAPILQFFGQNFRIGNAVFTYGVVAMVLLVALLWYALNRTAWGRYVYAVGDDP
EAAQLSGVNVKRMLISIYTLSGLICALAGWALIGRIGSVSPTAGQFANIESITAVVIGGISLFGGRGSIMGMLFGALIVG
VFSLGLRLMGTDPQWTYLLIGLLIIIAVAIDQWIRKVAA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=314, Percent_Identity=34.3949044585987, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788896, Length=313, Percent_Identity=34.5047923322684, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1790524, Length=310, Percent_Identity=34.8387096774194, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1788471, Length=276, Percent_Identity=35.5072463768116, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=40.9090909090909, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082395, Length=289, Percent_Identity=31.1418685121107, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693214, Length=267, Percent_Identity=35.5805243445693, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787794, Length=286, Percent_Identity=32.5174825174825, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI145693152, Length=212, Percent_Identity=33.0188679245283, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787793, Length=309, Percent_Identity=28.8025889967638, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 38168; Mature: 38037

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDSTTTAQPSQDFEKVLVDSSTEVASFDSHHKTPLQHLQHFLHSNPAAVPLIVLILSVI
CCCCCCCCCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
IFGVLLGGKFFSAFTMTLILQQMAIVGIVGAAQTLVILTAGIDLSVGAIMVLSSVVMGQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHH
AFRYGVPPVLSVLCGLGVGALCGYINGTLVARMKLPPFIVTLGMWQIVLASNFLYSANET
HHHHCCCHHHHHHHHCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCH
IRAQAIAADAPILQFFGQNFRIGNAVFTYGVVAMVLLVALLWYALNRTAWGRYVYAVGDD
HHHHHHHCCCHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
PEAAQLSGVNVKRMLISIYTLSGLICALAGWALIGRIGSVSPTAGQFANIESITAVVIGG
CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
ISLFGGRGSIMGMLFGALIVGVFSLGLRLMGTDPQWTYLLIGLLIIIAVAIDQWIRKVAA
HHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GDSTTTAQPSQDFEKVLVDSSTEVASFDSHHKTPLQHLQHFLHSNPAAVPLIVLILSVI
CCCCCCCCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
IFGVLLGGKFFSAFTMTLILQQMAIVGIVGAAQTLVILTAGIDLSVGAIMVLSSVVMGQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHH
AFRYGVPPVLSVLCGLGVGALCGYINGTLVARMKLPPFIVTLGMWQIVLASNFLYSANET
HHHHCCCHHHHHHHHCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCH
IRAQAIAADAPILQFFGQNFRIGNAVFTYGVVAMVLLVALLWYALNRTAWGRYVYAVGDD
HHHHHHHCCCHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
PEAAQLSGVNVKRMLISIYTLSGLICALAGWALIGRIGSVSPTAGQFANIESITAVVIGG
CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
ISLFGGRGSIMGMLFGALIVGVFSLGLRLMGTDPQWTYLLIGLLIIIAVAIDQWIRKVAA
HHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]