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The map label for this gene is 150395232

Identifier: 150395232

GI number: 150395232

Start: 3456

End: 4739

Strand: Direct

Name: 150395232

Synonym: Smed_0004

Alternate gene names: NA

Gene position: 3456-4739 (Clockwise)

Preceding gene: 150395231

Following gene: 150395233

Centisome position: 0.09

GC content: 66.04

Gene sequence:

>1284_bases
ATGACCGACACAGCCTGGATCGATCTCGCACTGGTTTCCGCACGGCCACAGGCCATGGGTGCGTTGCTGCGATACTTTCG
CAGCCTCGACCTGGCGGAGGAGGCGTTCCAGGAAGCCTGCATCCGGGCACTGAAAAACTGGCCGCGTACCGGTCCTCCGC
GCGATCCCGCCGCCTGGCTGATCTTCGTCGGCCGCAACAGCGGCATCGACCGGGTGCGCAGGCAGTCGCGCGAGACGGCA
TTGCCGCCGGAGGAACTGCTCTCCGACCTTGGCGACAGGGAGAGCGAGCTCGCCGATCGCCTCGATGGCGCACACTATCG
CGACGATATCCTGCGGCTGCTTTTCGTCTGCAGCAATCCGGCGCTTCCGGCGACCCAGCAGATCGCGCTTGCACTGCGCA
TCGTATCGGGCCTTTCCGTCAGGCAGATAGCCCGTGCCTTTCTTGTCGGCGAGGCGGCGATGGAGCAGCGCATCACCCGC
GCCAAGGCGCGTGTTGCGGCCGCCGGCATCCCTTTCGAAACGCCCGATGCCGCCGACCGGGCGGAGCGCCTCGCTGCAGT
CGCGACGATGATCTATCTTGTCTTCAACGAGGGCTACTCGGCGATGAACGGCCCCGAGGGTGTCTCCGCAGATCTCTGCG
ACGAGGCGATCCGCCTGTCCCGGCTGCTTCTTCGGCTGTTTCCGGCCGAGCCGGAGATCATGGGGCTGGCGGCGCTTCTG
CTCCTCCAGCATTCGCGCGCCCGCGCTCGGTTCGATGCCGCTGGCGCCGTGGTCCTGCTCGAAGATCAGGATCGGCAGCT
CTGGAACCGGCCGATGATCACCGAGGCGCTGGCGATGATCGACAAAGCGATGCGCCACCGGCGTCCCGGTCCCTATCAGA
TCCAGGCCGCAATCGCTGCCCTGCACGCCCGCGCCTCACGGCCGGAGGAAACGGATTGGGAGGAAATAGACCTCCTTTAC
CAGGCGCTCGAACGCCTGCAGCCCTCACCCGTCGTGACCCTCAATCGCGCCGTCGCGGTTTCGAAACGCGAGGGGCCCGA
GGCCGCGCTGGCGATGATTGAGCCTTTGGGCGAGCGGCTGTCCGGCTACTTCTATTATCATGGGCTGCGCGGCGGCCTCC
TGAAGCGGCTTGGCCTTGCATGCGAGGCGCGCAAAGCTTTCAACCAGGCAATCGCACTCGCCACCAACGCGGCCGAAGCG
GCCTATATCCGGACCCAGCTCGATCACCTCGCGGCTGCGCCGATGCCGGAACCTTCCTTCTCAAGTGATTGTCCTGGCGC
GTAG

Upstream 100 bases:

>100_bases
AAGCGCTCGACTTCGCGCGCGACCTCAGTAACGCCAATCCGAGCACGGGCTCTTACGAGGTCCGGCCGCTCGCCCTCTAT
AAACCCGGTGAGTTGCCCTC

Downstream 100 bases:

>100_bases
GCAGGCCTCCGCGATCTCAAGCGCGGGACGCACAAGCCCTTAGGCAGTTCGGCAAGGCCTTCATGATGAGGATTGCCGCG
GCCTTTGGCGAGGCGTCGCG

Product: RNA polymerase ECF-subfamily sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MTDTAWIDLALVSARPQAMGALLRYFRSLDLAEEAFQEACIRALKNWPRTGPPRDPAAWLIFVGRNSGIDRVRRQSRETA
LPPEELLSDLGDRESELADRLDGAHYRDDILRLLFVCSNPALPATQQIALALRIVSGLSVRQIARAFLVGEAAMEQRITR
AKARVAAAGIPFETPDAADRAERLAAVATMIYLVFNEGYSAMNGPEGVSADLCDEAIRLSRLLLRLFPAEPEIMGLAALL
LLQHSRARARFDAAGAVVLLEDQDRQLWNRPMITEALAMIDKAMRHRRPGPYQIQAAIAALHARASRPEETDWEEIDLLY
QALERLQPSPVVTLNRAVAVSKREGPEAALAMIEPLGERLSGYFYYHGLRGGLLKRLGLACEARKAFNQAIALATNAAEA
AYIRTQLDHLAAAPMPEPSFSSDCPGA

Sequences:

>Translated_427_residues
MTDTAWIDLALVSARPQAMGALLRYFRSLDLAEEAFQEACIRALKNWPRTGPPRDPAAWLIFVGRNSGIDRVRRQSRETA
LPPEELLSDLGDRESELADRLDGAHYRDDILRLLFVCSNPALPATQQIALALRIVSGLSVRQIARAFLVGEAAMEQRITR
AKARVAAAGIPFETPDAADRAERLAAVATMIYLVFNEGYSAMNGPEGVSADLCDEAIRLSRLLLRLFPAEPEIMGLAALL
LLQHSRARARFDAAGAVVLLEDQDRQLWNRPMITEALAMIDKAMRHRRPGPYQIQAAIAALHARASRPEETDWEEIDLLY
QALERLQPSPVVTLNRAVAVSKREGPEAALAMIEPLGERLSGYFYYHGLRGGLLKRLGLACEARKAFNQAIALATNAAEA
AYIRTQLDHLAAAPMPEPSFSSDCPGA
>Mature_426_residues
TDTAWIDLALVSARPQAMGALLRYFRSLDLAEEAFQEACIRALKNWPRTGPPRDPAAWLIFVGRNSGIDRVRRQSRETAL
PPEELLSDLGDRESELADRLDGAHYRDDILRLLFVCSNPALPATQQIALALRIVSGLSVRQIARAFLVGEAAMEQRITRA
KARVAAAGIPFETPDAADRAERLAAVATMIYLVFNEGYSAMNGPEGVSADLCDEAIRLSRLLLRLFPAEPEIMGLAALLL
LQHSRARARFDAAGAVVLLEDQDRQLWNRPMITEALAMIDKAMRHRRPGPYQIQAAIAALHARASRPEETDWEEIDLLYQ
ALERLQPSPVVTLNRAVAVSKREGPEAALAMIEPLGERLSGYFYYHGLRGGLLKRLGLACEARKAFNQAIALATNAAEAA
YIRTQLDHLAAAPMPEPSFSSDCPGA

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 46978; Mature: 46846

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTAWIDLALVSARPQAMGALLRYFRSLDLAEEAFQEACIRALKNWPRTGPPRDPAAWL
CCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
IFVGRNSGIDRVRRQSRETALPPEELLSDLGDRESELADRLDGAHYRDDILRLLFVCSNP
EEEECCCCHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
ALPATQQIALALRIVSGLSVRQIARAFLVGEAAMEQRITRAKARVAAAGIPFETPDAADR
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AERLAAVATMIYLVFNEGYSAMNGPEGVSADLCDEAIRLSRLLLRLFPAEPEIMGLAALL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LLQHSRARARFDAAGAVVLLEDQDRQLWNRPMITEALAMIDKAMRHRRPGPYQIQAAIAA
HHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LHARASRPEETDWEEIDLLYQALERLQPSPVVTLNRAVAVSKREGPEAALAMIEPLGERL
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHEECCCCCHHHHHHHHHHHHHHH
SGYFYYHGLRGGLLKRLGLACEARKAFNQAIALATNAAEAAYIRTQLDHLAAAPMPEPSF
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
SSDCPGA
CCCCCCC
>Mature Secondary Structure 
TDTAWIDLALVSARPQAMGALLRYFRSLDLAEEAFQEACIRALKNWPRTGPPRDPAAWL
CCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
IFVGRNSGIDRVRRQSRETALPPEELLSDLGDRESELADRLDGAHYRDDILRLLFVCSNP
EEEECCCCHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
ALPATQQIALALRIVSGLSVRQIARAFLVGEAAMEQRITRAKARVAAAGIPFETPDAADR
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AERLAAVATMIYLVFNEGYSAMNGPEGVSADLCDEAIRLSRLLLRLFPAEPEIMGLAALL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LLQHSRARARFDAAGAVVLLEDQDRQLWNRPMITEALAMIDKAMRHRRPGPYQIQAAIAA
HHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LHARASRPEETDWEEIDLLYQALERLQPSPVVTLNRAVAVSKREGPEAALAMIEPLGERL
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHEECCCCCHHHHHHHHHHHHHHH
SGYFYYHGLRGGLLKRLGLACEARKAFNQAIALATNAAEAAYIRTQLDHLAAAPMPEPSF
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
SSDCPGA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]