Click here to switch to the map view.

The map label for this gene is 150401411

Identifier: 150401411

GI number: 150401411

Start: 1013381

End: 1013896

Strand: Direct

Name: 150401411

Synonym: Maeo_0987

Alternate gene names: NA

Gene position: 1013381-1013896 (Clockwise)

Preceding gene: 150401410

Following gene: 150401420

Centisome position: 64.57

GC content: 24.81

Gene sequence:

>516_bases
ATGAGATGCTTTTTAGCCATTGAATTAACAGATAAATTAAAAGAAAAAATTGGAGAATTACAAAACAATTTTAAAATAAA
TGGCATTAAGTCGGTAGAAAAAGAAAATTTACATATTACGGTTAAATTTTTAGGAGATATTGATGATGATAAGCTGGAAA
AAATAAAACTCGTTGATTTATCTATCAATCCAGTTAACACACCAATTAAAGAAGTGGGAGTATTTCCCAATGAAAATTAT
ATAAAAATTATTTGGGTAGGAGCTCCCAAATTAACAAACACACTAAAAGAAATTGACGAGAAAATTTCAGAACTTGGCTT
TAAAAAAGAAAGAAGCTATATTCCCCATATCACAATTGGGAGAGTAAAATTTATTAAAGATAAAAACCATTTAAAAGAAA
AAATTGAAAAATATAAAAATATTAAATTTGATAATTTAGAAGTTAAAAATATTGTTTTAATTGGTAGCCAATTAACGGAA
AAAGGACCGATTTATACAACAATTAAAAAATGGTAA

Upstream 100 bases:

>100_bases
GAGATTTGGGGCTTCAAAATAATAAATTAATTTGTAAAAATTGTAATAAAAAATATCCGATAAAAGATAACATACCAATA
TTTTTAGAAGATGATATTTT

Downstream 100 bases:

>100_bases
TACAGGAGTGCATTTTAATATATTTAGTTATAATAAGCGATGCCATCTAAAATATTCCAGACGCCTAAATTCTAAAATAT
CTATGTAATTATCTACAAAG

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MRCFLAIELTDKLKEKIGELQNNFKINGIKSVEKENLHITVKFLGDIDDDKLEKIKLVDLSINPVNTPIKEVGVFPNENY
IKIIWVGAPKLTNTLKEIDEKISELGFKKERSYIPHITIGRVKFIKDKNHLKEKIEKYKNIKFDNLEVKNIVLIGSQLTE
KGPIYTTIKKW

Sequences:

>Translated_171_residues
MRCFLAIELTDKLKEKIGELQNNFKINGIKSVEKENLHITVKFLGDIDDDKLEKIKLVDLSINPVNTPIKEVGVFPNENY
IKIIWVGAPKLTNTLKEIDEKISELGFKKERSYIPHITIGRVKFIKDKNHLKEKIEKYKNIKFDNLEVKNIVLIGSQLTE
KGPIYTTIKKW
>Mature_171_residues
MRCFLAIELTDKLKEKIGELQNNFKINGIKSVEKENLHITVKFLGDIDDDKLEKIKLVDLSINPVNTPIKEVGVFPNENY
IKIIWVGAPKLTNTLKEIDEKISELGFKKERSYIPHITIGRVKFIKDKNHLKEKIEKYKNIKFDNLEVKNIVLIGSQLTE
KGPIYTTIKKW

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 19848; Mature: 19848

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCFLAIELTDKLKEKIGELQNNFKINGIKSVEKENLHITVKFLGDIDDDKLEKIKLVDL
CEEEEEEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEE
SINPVNTPIKEVGVFPNENYIKIIWVGAPKLTNTLKEIDEKISELGFKKERSYIPHITIG
ECCCCCCCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC
RVKFIKDKNHLKEKIEKYKNIKFDNLEVKNIVLIGSQLTEKGPIYTTIKKW
EEEEEECHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEEECC
>Mature Secondary Structure
MRCFLAIELTDKLKEKIGELQNNFKINGIKSVEKENLHITVKFLGDIDDDKLEKIKLVDL
CEEEEEEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEE
SINPVNTPIKEVGVFPNENYIKIIWVGAPKLTNTLKEIDEKISELGFKKERSYIPHITIG
ECCCCCCCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC
RVKFIKDKNHLKEKIEKYKNIKFDNLEVKNIVLIGSQLTEKGPIYTTIKKW
EEEEEECHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]