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The map label for this gene is hypD [C]

Identifier: 150401323

GI number: 150401323

Start: 920742

End: 921863

Strand: Direct

Name: hypD [C]

Synonym: Maeo_0896

Alternate gene names: 150401323

Gene position: 920742-921863 (Clockwise)

Preceding gene: 150401311

Following gene: 150401324

Centisome position: 58.66

GC content: 33.16

Gene sequence:

>1122_bases
ATGCTCCAAAATGTTAATGACAAAACATTAATTAAAAAATCAATATTGGGAATTAAAAAATTAGCAGATGAATTAAACAA
AGATGTAAAAATAATGCATGTATGCGGTTCTCATGAACATACAATATGCAAATATGGAATAAGAGATGTATTGCCAAATA
ATATAACTGTTATACCGGGTCCGGGCTGTCCTGTATGTGTTACAACCCAAAAAGAAATTGATAAGGCCATATATTTAGCA
GAAAAAGGATATACTGTTGCCACACTCGGGGACATGTATAGAGTTCCAGGAAGTGAAAAATCATTGATGCAACTTCAATC
AGAGGGGGCCGATGTAAAAATAGTATATGGTATAGGGGATGCCGTTAAATTTGCAAAGGAAAATCCAGATAAAAAGGTTG
TATTTGTGGCAATAGGATTTGAAACCACTGCACCAACTACGGCTTCGGAGCTCCTTAGTTTAAATAATTACAACAATAAT
GAAGACAATATAAAAAATAATAAAACCATAGATAATTTCCATATATTGAACTGCCATAGGCAAACTCCACCAGTTATGGA
CTTCTTATTAAGAGAGGGAACTGTAAATATGGACGGATTTATATGTCCCGGGCATGTTTCAGTTATTACTGGATTAAAAC
CATATTATGCACCTTGTGAAAAATATAAAGCTCCAATGGTGGTTGCAGGATTTGAACCAATTGATGTTTTAATGTCTATA
TTTTTAATATTAAAACAGATGATAAATGAGGAGGCAAAAGTAGAAAATGCCTATAAAAGAGGGGTTAGGGAGGAAGGAAA
TATTGTAGCTCAAAAAATTATAAATAAAGTATTCGAACCTTGCGATGTAGCTTGGAGGGGTTTTCCAGTAATTACCGATG
GAGGATTAAAATTAAGAGAAGAATATGAAAAATATGATATACACAATATAGAGGAGCTCCCTGTAATTGAAGAAAAAATA
AACAAAGCCTGTATATGTAGTAAAATATTGAGGGGAGAAAAATTACCAACTGACTGTAAATTGTTCGGAGCTCCCTGCAA
TCCAATGAATCCAATAGGTAGTTGTATGGTTTCAGACGAGGGAACATGCAGAATATTTTATAAATACCATAATAAATTAT
AA

Upstream 100 bases:

>100_bases
AATTTAATACATACCTATTTATCTTTTATATATTTTATTAATGTCCAAATGTTTATAATATTTTAATATTTATAATAATA
AGTTTATTAATGTGATAATT

Downstream 100 bases:

>100_bases
TTAATATTGTGATATTTTGTGGTGTGATATTTATGGGATATCTGGGTTTAACCGCACAGGAAGCCGAAGAAAGATTAAAG
AAATATGGCTACAATGAATT

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MLQNVNDKTLIKKSILGIKKLADELNKDVKIMHVCGSHEHTICKYGIRDVLPNNITVIPGPGCPVCVTTQKEIDKAIYLA
EKGYTVATLGDMYRVPGSEKSLMQLQSEGADVKIVYGIGDAVKFAKENPDKKVVFVAIGFETTAPTTASELLSLNNYNNN
EDNIKNNKTIDNFHILNCHRQTPPVMDFLLREGTVNMDGFICPGHVSVITGLKPYYAPCEKYKAPMVVAGFEPIDVLMSI
FLILKQMINEEAKVENAYKRGVREEGNIVAQKIINKVFEPCDVAWRGFPVITDGGLKLREEYEKYDIHNIEELPVIEEKI
NKACICSKILRGEKLPTDCKLFGAPCNPMNPIGSCMVSDEGTCRIFYKYHNKL

Sequences:

>Translated_373_residues
MLQNVNDKTLIKKSILGIKKLADELNKDVKIMHVCGSHEHTICKYGIRDVLPNNITVIPGPGCPVCVTTQKEIDKAIYLA
EKGYTVATLGDMYRVPGSEKSLMQLQSEGADVKIVYGIGDAVKFAKENPDKKVVFVAIGFETTAPTTASELLSLNNYNNN
EDNIKNNKTIDNFHILNCHRQTPPVMDFLLREGTVNMDGFICPGHVSVITGLKPYYAPCEKYKAPMVVAGFEPIDVLMSI
FLILKQMINEEAKVENAYKRGVREEGNIVAQKIINKVFEPCDVAWRGFPVITDGGLKLREEYEKYDIHNIEELPVIEEKI
NKACICSKILRGEKLPTDCKLFGAPCNPMNPIGSCMVSDEGTCRIFYKYHNKL
>Mature_373_residues
MLQNVNDKTLIKKSILGIKKLADELNKDVKIMHVCGSHEHTICKYGIRDVLPNNITVIPGPGCPVCVTTQKEIDKAIYLA
EKGYTVATLGDMYRVPGSEKSLMQLQSEGADVKIVYGIGDAVKFAKENPDKKVVFVAIGFETTAPTTASELLSLNNYNNN
EDNIKNNKTIDNFHILNCHRQTPPVMDFLLREGTVNMDGFICPGHVSVITGLKPYYAPCEKYKAPMVVAGFEPIDVLMSI
FLILKQMINEEAKVENAYKRGVREEGNIVAQKIINKVFEPCDVAWRGFPVITDGGLKLREEYEKYDIHNIEELPVIEEKI
NKACICSKILRGEKLPTDCKLFGAPCNPMNPIGSCMVSDEGTCRIFYKYHNKL

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=358, Percent_Identity=37.9888268156425, Blast_Score=259, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41696; Mature: 41696

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQNVNDKTLIKKSILGIKKLADELNKDVKIMHVCGSHEHTICKYGIRDVLPNNITVIPG
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEECC
PGCPVCVTTQKEIDKAIYLAEKGYTVATLGDMYRVPGSEKSLMQLQSEGADVKIVYGIGD
CCCCEEEECHHHHHHEEEEECCCCEEEECCHHHCCCCCHHHHHHHHHCCCCEEEEEECCH
AVKFAKENPDKKVVFVAIGFETTAPTTASELLSLNNYNNNEDNIKNNKTIDNFHILNCHR
HHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC
QTPPVMDFLLREGTVNMDGFICPGHVSVITGLKPYYAPCEKYKAPMVVAGFEPIDVLMSI
CCCHHHHHHHHCCCCCCCCEECCCHHHHHHCCCCCCCCHHHCCCCEEEECCCHHHHHHHH
FLILKQMINEEAKVENAYKRGVREEGNIVAQKIINKVFEPCDVAWRGFPVITDGGLKLRE
HHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHCCCEEEECCCCHHHH
EYEKYDIHNIEELPVIEEKINKACICSKILRGEKLPTDCKLFGAPCNPMNPIGSCMVSDE
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHCEEECCC
GTCRIFYKYHNKL
CCEEEEEEECCCC
>Mature Secondary Structure
MLQNVNDKTLIKKSILGIKKLADELNKDVKIMHVCGSHEHTICKYGIRDVLPNNITVIPG
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEECC
PGCPVCVTTQKEIDKAIYLAEKGYTVATLGDMYRVPGSEKSLMQLQSEGADVKIVYGIGD
CCCCEEEECHHHHHHEEEEECCCCEEEECCHHHCCCCCHHHHHHHHHCCCCEEEEEECCH
AVKFAKENPDKKVVFVAIGFETTAPTTASELLSLNNYNNNEDNIKNNKTIDNFHILNCHR
HHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC
QTPPVMDFLLREGTVNMDGFICPGHVSVITGLKPYYAPCEKYKAPMVVAGFEPIDVLMSI
CCCHHHHHHHHCCCCCCCCEECCCHHHHHHCCCCCCCCHHHCCCCEEEECCCHHHHHHHH
FLILKQMINEEAKVENAYKRGVREEGNIVAQKIINKVFEPCDVAWRGFPVITDGGLKLRE
HHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHCCCEEEECCCCHHHH
EYEKYDIHNIEELPVIEEKINKACICSKILRGEKLPTDCKLFGAPCNPMNPIGSCMVSDE
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHCEEECCC
GTCRIFYKYHNKL
CCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]