| Definition | Methanococcus aeolicus Nankai-3, complete genome. |
|---|---|
| Accession | NC_009635 |
| Length | 1,569,500 |
Click here to switch to the map view.
The map label for this gene is lhr [C]
Identifier: 150401244
GI number: 150401244
Start: 842958
End: 845408
Strand: Direct
Name: lhr [C]
Synonym: Maeo_0815
Alternate gene names: 150401244
Gene position: 842958-845408 (Clockwise)
Preceding gene: 150401238
Following gene: 150401255
Centisome position: 53.71
GC content: 27.91
Gene sequence:
>2451_bases ATGGATTTATCGAATAAAATAAAATATTATGCTATTATGAGACAGGTTGGGCAAAATTTATCCCTCCACAAATGTAAAGA AGAAAACAAAAACAACATAAACCCAATTCAACCTTCAAAAGTGTTAGCCGTTTTGAGAAGCAAAAAAATATATTTAAATA ATGACCCCGAATCCCTAACACTTGAAGACTTTTTTAAAAAAAATAATATTTCATATAAACTTATAGAGCTATGCCCATTT TGCTTAATAAAAAATCAATATACGGAACTAAATAATGAATATTATAAATTCCACAATCATAAAATATGTAAAGACTGTGC CATTGATGAGGTAAAATTAGAGGTAGATATTGGCGAAGAATTTATTGAAAAATTATTAAATAAATTTAAAGATGTAAATA AAGTAATAGATATATTTAATATAAAAAATCCGATAAATCACCCAGAATTAACTAAATATGATACCATAACAGGAGGTAAA GAGGACAGAATTAAAAATTATAAAATAGATGAATTAAATATACCAGATGAATTAAAAGAAATTATACGAAAGAAAAAAAT CAGGGAGCTCCTACCGGTTCAAACTCTTGCCGTAAATGGCGGACTATTGGATGGAAAAGATTTAGTAATTACTTCGGCAA CCTCCTCGGGAAAAACTCTTATAGGGGAGCTCGCAGGAATTAAAAATTTAAAGGAAAATAAAGGAAAATTTTTATTTTTG GTGCCATTGGTGGCTTTGGCAAATCAAAAATATTTGGAATTCTATGAAAAATATAAAAATATATTTTCTGTTAGTTTAAG AGTTGGAATGGGGCGACTATCAGAACATAAACAGGACGAAATTAGCACAGACCCCAATGCAGATATTATTATTGGAACTT ATGAAGGTATTGATTATTTGCTTCGTTCTGGAAAATTAAATGATATTGGAACTGTGGTAATTGATGAAGTTCATTCACTA AATATGGAAGAAAGAGGAGCAAGAATTGATGGACTTATTGGTAGATTAAGATATTTAAAAAATATCAATAATAAAAATAG AGATAATAAAAATAATATACAACTAATATATTTATCTGCCACAATAGGAAATTCAAAAGAATTGGCGAATTTTTTAAATG CAAATTTAATAATATATAAGGGAAGACCCGTTCCACTTGAAAGACATTTAATTTTTGCCAAAAATGATTACAATAAAATT AATTTTATAAATGAAGTTGTTAAAAAAGAATTTAACAAAAAATCAAAACAAGGATTTAAAGGACAAAGTTTAATATTTAC ATACTCACGAAAAAGAGCCGAATATTTGGCAAATTTATTAAATACAAGAGGAATAAAATCAGATTATTATCATGCAGGTA TGGAATATAAAAGAAGAAGAGAAGTAGAAAGAAAATTTATGAGTCAAAAAATAATGTGTGTAATTACCACTTCGGCACTT GCCGCAGGTGTAGATTTCCCGGCATCAACGGTAATTCTTGAAAGTTTGGCCATGGGTGGGGATTGGCTAAATCCATCAGA ATTTCAACAGATGTGCGGTAGGGCAGGAAGAAAAGGTATGCATAATTTAGGAAAAGTTTATATGATGGTAGAATTGGGTA AAAAATATCATGCCAAAATGGGAAATACTGAGGACGAAATAGCCTTTAAATTATTGAGCTCTGAACCAGAAGATGTTATC GTAGAATACAACGAAGATGAGGAATTAGAACAAATATTAGCAAGTATTTCATTTATTGATAAATACCACAAACCAGCAGA ATATACAAAATTAAAAAACATGAAATTAATGGGCAAAAATCATGATCTAAATTATATTGTTGAAACATTGAATAATTATA ATATGGTGGAGCTCCACAACAGACACAATAAAAATAAAACAATGAGCACCACAAAATATGGATATAGCACAGCAATATCA TTTTTATATCCCAAGGATGCCGAAAAAATCAGGAAAAACCTACGAAAGCCTATTATGGATTTAGTAGGATATATAAATCC ATTTGAGAATTTATATATTCCTCCACATATTAAAAATAAAATTTCAAAGGTAATAAATACAAATATACCATCTAAATTTA TAGATGGTTATGAAATTATAAAGGAAAATGTTTCAAAAATAACAGACAAAGAATTAAGGGAGAATATATTAATTTGGATA ATTGAATTTGATGGCATGATTGAAGAAGATATTATATTATATTTCTCGAAATATATATTAAATCTCAGAGCAAACAAAAA AACACCCGCACAGATTTCAAAAATATTGTATGATAATTACAACATTCAAACTTATTCAGGAGATATATACTCATACCTTG AAAATAGCATTAAGGTATTGGATGCCGTTGAAAGAATTGGAAACATATATAATAAAAAAATAGGGGCTGAGGCAAAAATT TTTAAAGAAAATATTTCAAATCCATATAAAAAGAAAAAGAAAAATGATTAA
Upstream 100 bases:
>100_bases CAAAGTAATTCGTCGATTTACTACGAACCATAAATTTGGTGATATATTGATTATTGTGAGAAAATTAAAAAGGAAAAAAC AAAAACAAGAAATTGAGATA
Downstream 100 bases:
>100_bases AACCAAATAATATATATCTTATCTTGTTTTATTTAAGAAGTAATCCAATATTGCTAAACCGCCACCATAACATACAGGTT CTGGATGCAGTGATATATAG
Product: DEAD/DEAH box helicase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 816; Mature: 816
Protein sequence:
>816_residues MDLSNKIKYYAIMRQVGQNLSLHKCKEENKNNINPIQPSKVLAVLRSKKIYLNNDPESLTLEDFFKKNNISYKLIELCPF CLIKNQYTELNNEYYKFHNHKICKDCAIDEVKLEVDIGEEFIEKLLNKFKDVNKVIDIFNIKNPINHPELTKYDTITGGK EDRIKNYKIDELNIPDELKEIIRKKKIRELLPVQTLAVNGGLLDGKDLVITSATSSGKTLIGELAGIKNLKENKGKFLFL VPLVALANQKYLEFYEKYKNIFSVSLRVGMGRLSEHKQDEISTDPNADIIIGTYEGIDYLLRSGKLNDIGTVVIDEVHSL NMEERGARIDGLIGRLRYLKNINNKNRDNKNNIQLIYLSATIGNSKELANFLNANLIIYKGRPVPLERHLIFAKNDYNKI NFINEVVKKEFNKKSKQGFKGQSLIFTYSRKRAEYLANLLNTRGIKSDYYHAGMEYKRRREVERKFMSQKIMCVITTSAL AAGVDFPASTVILESLAMGGDWLNPSEFQQMCGRAGRKGMHNLGKVYMMVELGKKYHAKMGNTEDEIAFKLLSSEPEDVI VEYNEDEELEQILASISFIDKYHKPAEYTKLKNMKLMGKNHDLNYIVETLNNYNMVELHNRHNKNKTMSTTKYGYSTAIS FLYPKDAEKIRKNLRKPIMDLVGYINPFENLYIPPHIKNKISKVINTNIPSKFIDGYEIIKENVSKITDKELRENILIWI IEFDGMIEEDIILYFSKYILNLRANKKTPAQISKILYDNYNIQTYSGDIYSYLENSIKVLDAVERIGNIYNKKIGAEAKI FKENISNPYKKKKKND
Sequences:
>Translated_816_residues MDLSNKIKYYAIMRQVGQNLSLHKCKEENKNNINPIQPSKVLAVLRSKKIYLNNDPESLTLEDFFKKNNISYKLIELCPF CLIKNQYTELNNEYYKFHNHKICKDCAIDEVKLEVDIGEEFIEKLLNKFKDVNKVIDIFNIKNPINHPELTKYDTITGGK EDRIKNYKIDELNIPDELKEIIRKKKIRELLPVQTLAVNGGLLDGKDLVITSATSSGKTLIGELAGIKNLKENKGKFLFL VPLVALANQKYLEFYEKYKNIFSVSLRVGMGRLSEHKQDEISTDPNADIIIGTYEGIDYLLRSGKLNDIGTVVIDEVHSL NMEERGARIDGLIGRLRYLKNINNKNRDNKNNIQLIYLSATIGNSKELANFLNANLIIYKGRPVPLERHLIFAKNDYNKI NFINEVVKKEFNKKSKQGFKGQSLIFTYSRKRAEYLANLLNTRGIKSDYYHAGMEYKRRREVERKFMSQKIMCVITTSAL AAGVDFPASTVILESLAMGGDWLNPSEFQQMCGRAGRKGMHNLGKVYMMVELGKKYHAKMGNTEDEIAFKLLSSEPEDVI VEYNEDEELEQILASISFIDKYHKPAEYTKLKNMKLMGKNHDLNYIVETLNNYNMVELHNRHNKNKTMSTTKYGYSTAIS FLYPKDAEKIRKNLRKPIMDLVGYINPFENLYIPPHIKNKISKVINTNIPSKFIDGYEIIKENVSKITDKELRENILIWI IEFDGMIEEDIILYFSKYILNLRANKKTPAQISKILYDNYNIQTYSGDIYSYLENSIKVLDAVERIGNIYNKKIGAEAKI FKENISNPYKKKKKND >Mature_816_residues MDLSNKIKYYAIMRQVGQNLSLHKCKEENKNNINPIQPSKVLAVLRSKKIYLNNDPESLTLEDFFKKNNISYKLIELCPF CLIKNQYTELNNEYYKFHNHKICKDCAIDEVKLEVDIGEEFIEKLLNKFKDVNKVIDIFNIKNPINHPELTKYDTITGGK EDRIKNYKIDELNIPDELKEIIRKKKIRELLPVQTLAVNGGLLDGKDLVITSATSSGKTLIGELAGIKNLKENKGKFLFL VPLVALANQKYLEFYEKYKNIFSVSLRVGMGRLSEHKQDEISTDPNADIIIGTYEGIDYLLRSGKLNDIGTVVIDEVHSL NMEERGARIDGLIGRLRYLKNINNKNRDNKNNIQLIYLSATIGNSKELANFLNANLIIYKGRPVPLERHLIFAKNDYNKI NFINEVVKKEFNKKSKQGFKGQSLIFTYSRKRAEYLANLLNTRGIKSDYYHAGMEYKRRREVERKFMSQKIMCVITTSAL AAGVDFPASTVILESLAMGGDWLNPSEFQQMCGRAGRKGMHNLGKVYMMVELGKKYHAKMGNTEDEIAFKLLSSEPEDVI VEYNEDEELEQILASISFIDKYHKPAEYTKLKNMKLMGKNHDLNYIVETLNNYNMVELHNRHNKNKTMSTTKYGYSTAIS FLYPKDAEKIRKNLRKPIMDLVGYINPFENLYIPPHIKNKISKVINTNIPSKFIDGYEIIKENVSKITDKELRENILIWI IEFDGMIEEDIILYFSKYILNLRANKKTPAQISKILYDNYNIQTYSGDIYSYLENSIKVLDAVERIGNIYNKKIGAEAKI FKENISNPYKKKKKND
Specific function: Unknown
COG id: COG1202
COG function: function code R; Superfamily II helicase, archaea-specific
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI130484567, Length=403, Percent_Identity=26.0545905707196, Blast_Score=109, Evalue=1e-23, Organism=Homo sapiens, GI193211480, Length=413, Percent_Identity=24.455205811138, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI40217847, Length=406, Percent_Identity=24.6305418719212, Blast_Score=102, Evalue=2e-21, Organism=Homo sapiens, GI169218225, Length=402, Percent_Identity=24.6268656716418, Blast_Score=100, Evalue=1e-20, Organism=Homo sapiens, GI139394648, Length=196, Percent_Identity=30.6122448979592, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI51242943, Length=364, Percent_Identity=23.0769230769231, Blast_Score=77, Evalue=9e-14, Organism=Homo sapiens, GI51242947, Length=364, Percent_Identity=23.0769230769231, Blast_Score=76, Evalue=2e-13, Organism=Homo sapiens, GI148612816, Length=364, Percent_Identity=23.3516483516484, Blast_Score=74, Evalue=7e-13, Organism=Homo sapiens, GI110556640, Length=194, Percent_Identity=26.8041237113402, Blast_Score=70, Evalue=1e-11, Organism=Homo sapiens, GI38569503, Length=358, Percent_Identity=27.0949720670391, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI38569505, Length=358, Percent_Identity=27.0949720670391, Blast_Score=68, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71995032, Length=392, Percent_Identity=23.7244897959184, Blast_Score=103, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17537519, Length=386, Percent_Identity=25.6476683937824, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17542826, Length=417, Percent_Identity=23.7410071942446, Blast_Score=99, Evalue=1e-20, Organism=Caenorhabditis elegans, GI133930973, Length=201, Percent_Identity=30.8457711442786, Blast_Score=77, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71987993, Length=372, Percent_Identity=24.4623655913978, Blast_Score=70, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71987997, Length=372, Percent_Identity=24.4623655913978, Blast_Score=69, Evalue=8e-12, Organism=Caenorhabditis elegans, GI32564293, Length=374, Percent_Identity=23.5294117647059, Blast_Score=69, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI9755332, Length=412, Percent_Identity=28.6407766990291, Blast_Score=112, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6322411, Length=440, Percent_Identity=22.7272727272727, Blast_Score=102, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6321020, Length=470, Percent_Identity=23.4042553191489, Blast_Score=100, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6321710, Length=365, Percent_Identity=24.9315068493151, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6323844, Length=357, Percent_Identity=25.4901960784314, Blast_Score=82, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6323430, Length=230, Percent_Identity=28.695652173913, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24647182, Length=403, Percent_Identity=23.8213399503722, Blast_Score=104, Evalue=3e-22, Organism=Drosophila melanogaster, GI17864608, Length=201, Percent_Identity=25.3731343283582, Blast_Score=79, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR014014 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 94350; Mature: 94350
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLSNKIKYYAIMRQVGQNLSLHKCKEENKNNINPIQPSKVLAVLRSKKIYLNNDPESLT CCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCC LEDFFKKNNISYKLIELCPFCLIKNQYTELNNEYYKFHNHKICKDCAIDEVKLEVDIGEE HHHHHHHCCCCEEHHHHHHHHHHCCHHHHHCCHHHHHCCCCHHHHCCCCEEEEEEECCHH FIEKLLNKFKDVNKVIDIFNIKNPINHPELTKYDTITGGKEDRIKNYKIDELNIPDELKE HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHH IIRKKKIRELLPVQTLAVNGGLLDGKDLVITSATSSGKTLIGELAGIKNLKENKGKFLFL HHHHHHHHHHCCHHEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE VPLVALANQKYLEFYEKYKNIFSVSLRVGMGRLSEHKQDEISTDPNADIIIGTYEGIDYL EHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCEEEECHHHHHHH LRSGKLNDIGTVVIDEVHSLNMEERGARIDGLIGRLRYLKNINNKNRDNKNNIQLIYLSA HHCCCCCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEE TIGNSKELANFLNANLIIYKGRPVPLERHLIFAKNDYNKINFINEVVKKEFNKKSKQGFK ECCCHHHHHHHHCCCEEEECCCCCCHHCEEEEEECCCCHHHHHHHHHHHHHCHHHHCCCC GQSLIFTYSRKRAEYLANLLNTRGIKSDYYHAGMEYKRRREVERKFMSQKIMCVITTSAL CCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEEHHHH AAGVDFPASTVILESLAMGGDWLNPSEFQQMCGRAGRKGMHNLGKVYMMVELGKKYHAKM HHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC GNTEDEIAFKLLSSEPEDVIVEYNEDEELEQILASISFIDKYHKPAEYTKLKNMKLMGKN CCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCEEEECCC HDLNYIVETLNNYNMVELHNRHNKNKTMSTTKYGYSTAISFLYPKDAEKIRKNLRKPIMD CCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHEEEECCCCHHHHHHHHHHHHHH LVGYINPFENLYIPPHIKNKISKVINTNIPSKFIDGYEIIKENVSKITDKELRENILIWI HHHHCCCHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE IEFDGMIEEDIILYFSKYILNLRANKKTPAQISKILYDNYNIQTYSGDIYSYLENSIKVL EECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH DAVERIGNIYNKKIGAEAKIFKENISNPYKKKKKND HHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHCCCCC >Mature Secondary Structure MDLSNKIKYYAIMRQVGQNLSLHKCKEENKNNINPIQPSKVLAVLRSKKIYLNNDPESLT CCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCC LEDFFKKNNISYKLIELCPFCLIKNQYTELNNEYYKFHNHKICKDCAIDEVKLEVDIGEE HHHHHHHCCCCEEHHHHHHHHHHCCHHHHHCCHHHHHCCCCHHHHCCCCEEEEEEECCHH FIEKLLNKFKDVNKVIDIFNIKNPINHPELTKYDTITGGKEDRIKNYKIDELNIPDELKE HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHH IIRKKKIRELLPVQTLAVNGGLLDGKDLVITSATSSGKTLIGELAGIKNLKENKGKFLFL HHHHHHHHHHCCHHEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE VPLVALANQKYLEFYEKYKNIFSVSLRVGMGRLSEHKQDEISTDPNADIIIGTYEGIDYL EHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCEEEECHHHHHHH LRSGKLNDIGTVVIDEVHSLNMEERGARIDGLIGRLRYLKNINNKNRDNKNNIQLIYLSA HHCCCCCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEE TIGNSKELANFLNANLIIYKGRPVPLERHLIFAKNDYNKINFINEVVKKEFNKKSKQGFK ECCCHHHHHHHHCCCEEEECCCCCCHHCEEEEEECCCCHHHHHHHHHHHHHCHHHHCCCC GQSLIFTYSRKRAEYLANLLNTRGIKSDYYHAGMEYKRRREVERKFMSQKIMCVITTSAL CCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEEHHHH AAGVDFPASTVILESLAMGGDWLNPSEFQQMCGRAGRKGMHNLGKVYMMVELGKKYHAKM HHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC GNTEDEIAFKLLSSEPEDVIVEYNEDEELEQILASISFIDKYHKPAEYTKLKNMKLMGKN CCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCEEEECCC HDLNYIVETLNNYNMVELHNRHNKNKTMSTTKYGYSTAISFLYPKDAEKIRKNLRKPIMD CCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHEEEECCCCHHHHHHHHHHHHHH LVGYINPFENLYIPPHIKNKISKVINTNIPSKFIDGYEIIKENVSKITDKELRENILIWI HHHHCCCHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE IEFDGMIEEDIILYFSKYILNLRANKKTPAQISKILYDNYNIQTYSGDIYSYLENSIKVL EECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH DAVERIGNIYNKKIGAEAKIFKENISNPYKKKKKND HHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]