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The map label for this gene is rpoH

Identifier: 150401221

GI number: 150401221

Start: 819679

End: 819915

Strand: Reverse

Name: rpoH

Synonym: Maeo_0792

Alternate gene names: 150401221

Gene position: 819915-819679 (Counterclockwise)

Preceding gene: 150401225

Following gene: 150401220

Centisome position: 52.24

GC content: 33.33

Gene sequence:

>237_bases
GTGAAGATAGCATTAAATCAAATGGTTCCTAAGCATGAAGTTATTTCAAAGGAAGAAGTTCAAAAGTTATTAGCGAAATA
CGATATAAAGATACAACAGCTACCAAAAATATTTGATATTGACCCCGTTATTGAAGAAATTGGGGCAAAACCTGGCGATG
TAGTTAAAATATCAAGAGATAGCCCAACCTCGGGACATGCTACATATTATAGGTTAGTAGTCAAAAAGACAATTTAA

Upstream 100 bases:

>100_bases
ATATATATATGGTATATTTACTATGTTATTTATTATTTCATTTATTTATATTCTATTTTAATCAATTCAATTATACAATA
TATCTTTAAGGTGGCATACT

Downstream 100 bases:

>100_bases
GTATTTTTCCATTTTCGAAGGAAAAAGTGAGTATTTTTTTAGAATTATCGAAGCGAAGTGGAGAGCTACAAAAACTAGAA
TAGTTTTTGTTCAATAGAAT

Product: DNA-directed RNA polymerase subunit H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MKIALNQMVPKHEVISKEEVQKLLAKYDIKIQQLPKIFDIDPVIEEIGAKPGDVVKISRDSPTSGHATYYRLVVKKTI

Sequences:

>Translated_78_residues
MKIALNQMVPKHEVISKEEVQKLLAKYDIKIQQLPKIFDIDPVIEEIGAKPGDVVKISRDSPTSGHATYYRLVVKKTI
>Mature_78_residues
MKIALNQMVPKHEVISKEEVQKLLAKYDIKIQQLPKIFDIDPVIEEIGAKPGDVVKISRDSPTSGHATYYRLVVKKTI

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG2012

COG function: function code K; DNA-directed RNA polymerase, subunit H, RpoH/RPB5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoH/eukaryotic RPB5 RNA polymerase subunit family

Homologues:

Organism=Homo sapiens, GI14589951, Length=73, Percent_Identity=47.945205479452, Blast_Score=66, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17507947, Length=74, Percent_Identity=45.945945945946, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6319630, Length=74, Percent_Identity=43.2432432432432, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOH_META3 (A6UV53)

Other databases:

- EMBL:   CP000743
- RefSeq:   YP_001324987.1
- ProteinModelPortal:   A6UV53
- SMR:   A6UV53
- STRING:   A6UV53
- GeneID:   5326443
- GenomeReviews:   CP000743_GR
- KEGG:   mae:Maeo_0792
- eggNOG:   arNOG12569
- HOGENOM:   HBG496846
- OMA:   IKRKSPT
- ProtClustDB:   PRK09570
- BioCyc:   MAEO419665:MAEO_0792-MONOMER
- HAMAP:   MF_00025
- InterPro:   IPR020609
- InterPro:   IPR000783
- Gene3D:   G3DSA:3.90.940.20
- ProDom:   PD005155

Pfam domain/function: PF01191 RNA_pol_Rpb5_C; SSF55287 RNApol_RPB5_like

EC number: =2.7.7.6

Molecular weight: Translated: 8845; Mature: 8845

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS01110 RNA_POL_H_23KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIALNQMVPKHEVISKEEVQKLLAKYDIKIQQLPKIFDIDPVIEEIGAKPGDVVKISRD
CCCCCCCCCCCHHHCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHCCCCCCEEEEECC
SPTSGHATYYRLVVKKTI
CCCCCCHHHHHEEEEECC
>Mature Secondary Structure
MKIALNQMVPKHEVISKEEVQKLLAKYDIKIQQLPKIFDIDPVIEEIGAKPGDVVKISRD
CCCCCCCCCCCHHHCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHCCCCCCEEEEECC
SPTSGHATYYRLVVKKTI
CCCCCCHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA