| Definition | Methanococcus aeolicus Nankai-3, complete genome. |
|---|---|
| Accession | NC_009635 |
| Length | 1,569,500 |
Click here to switch to the map view.
The map label for this gene is rpiA
Identifier: 150401166
GI number: 150401166
Start: 755572
End: 756276
Strand: Reverse
Name: rpiA
Synonym: Maeo_0737
Alternate gene names: 150401166
Gene position: 756276-755572 (Counterclockwise)
Preceding gene: 150401167
Following gene: 150401165
Centisome position: 48.19
GC content: 33.76
Gene sequence:
>705_bases ATGGCAAGAAAAAAAGCAGTTAAAGTAGAAGCTGACCCAAGATTAAATGCAGTAAATGAGGCCCTTAAATTTATAAAAGA TGGAATGATTGTAGGATTGGGCTCAGGGACTACGGCAAATTTATTTATCGCGGAATTGGGCAAAAAAATATCGGAAGAGG GTTTAAATGTATTTGGAGTTCCAACATCATTCGAATCTCGAATGATGGCTATTCAGTATGGCATCCCATTGGTATCTCTT GACGAATATGGAGAGTTAGATATTGCGGTGGATGGTGCTGATGAAGTGAATAAAGAGACATTAAATGTTATAAAAGGTGG CGGTGGTTGCCATACTCAAGAAAAAATAATTGATTATTGTGCAAAAGAGCTCATAATTATTGTGGATGAAAGTAAGCTTG TGGATTCATTGGGGGAAAATACACCAGTTCCTCTTGAAGTTCTTCCATTTGCATATTCTTCCGTATTAAATGAATTATTG AAAATGAATTCAGCACCTTCAATTAGGATGGCAGATAAAAAAATGGGCCCAGTGATTACAGATAATGGAAATATGATTAT TGATGTATTTATTGATTTAAATAATCCCGAAGAAGTTGAAAAACAATTAAACAATATTCCAGGGGTTGTCGAAAATGGTA TATTTACAAAAGTTGATAAAGTGATAGTAGGAAAATCTGATAAGGCAGAAATATTAAAAAAATAA
Upstream 100 bases:
>100_bases CAAACTTTTCGAATACGATATATTTATGGTGTAATCTTTATATATTATTTTAACAACTATTTTGTATAAAACAACATAGA TATAAAAAATCGGTGAAAAT
Downstream 100 bases:
>100_bases ATATCATTAATCTTCGGTCTTTTTCATAAATATACTCTACAATTAAGCCAAAATAGCCTACTATATTACTAAAAAACATA AAACCACATATAATTAGGAC
Product: ribose-5-phosphate isomerase A
Products: NA
Alternate protein names: Phosphoriboisomerase A; PRI
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MARKKAVKVEADPRLNAVNEALKFIKDGMIVGLGSGTTANLFIAELGKKISEEGLNVFGVPTSFESRMMAIQYGIPLVSL DEYGELDIAVDGADEVNKETLNVIKGGGGCHTQEKIIDYCAKELIIIVDESKLVDSLGENTPVPLEVLPFAYSSVLNELL KMNSAPSIRMADKKMGPVITDNGNMIIDVFIDLNNPEEVEKQLNNIPGVVENGIFTKVDKVIVGKSDKAEILKK
Sequences:
>Translated_234_residues MARKKAVKVEADPRLNAVNEALKFIKDGMIVGLGSGTTANLFIAELGKKISEEGLNVFGVPTSFESRMMAIQYGIPLVSL DEYGELDIAVDGADEVNKETLNVIKGGGGCHTQEKIIDYCAKELIIIVDESKLVDSLGENTPVPLEVLPFAYSSVLNELL KMNSAPSIRMADKKMGPVITDNGNMIIDVFIDLNNPEEVEKQLNNIPGVVENGIFTKVDKVIVGKSDKAEILKK >Mature_233_residues ARKKAVKVEADPRLNAVNEALKFIKDGMIVGLGSGTTANLFIAELGKKISEEGLNVFGVPTSFESRMMAIQYGIPLVSLD EYGELDIAVDGADEVNKETLNVIKGGGGCHTQEKIIDYCAKELIIIVDESKLVDSLGENTPVPLEVLPFAYSSVLNELLK MNSAPSIRMADKKMGPVITDNGNMIIDVFIDLNNPEEVEKQLNNIPGVVENGIFTKVDKVIVGKSDKAEILKK
Specific function: Nonoxidative branch of the pentose phosphate pathway. [C]
COG id: COG0120
COG function: function code G; Ribose 5-phosphate isomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribose 5-phosphate isomerase family
Homologues:
Organism=Homo sapiens, GI94536842, Length=208, Percent_Identity=40.3846153846154, Blast_Score=154, Evalue=5e-38, Organism=Escherichia coli, GI1789280, Length=218, Percent_Identity=39.9082568807339, Blast_Score=128, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17551758, Length=213, Percent_Identity=38.9671361502347, Blast_Score=144, Evalue=3e-35, Organism=Saccharomyces cerevisiae, GI6324669, Length=225, Percent_Identity=37.7777777777778, Blast_Score=131, Evalue=1e-31, Organism=Drosophila melanogaster, GI281364072, Length=198, Percent_Identity=37.8787878787879, Blast_Score=134, Evalue=4e-32,
Paralogues:
None
Copy number: 740 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): RPIA_META3 (A6UUZ8)
Other databases:
- EMBL: CP000743 - RefSeq: YP_001324932.1 - ProteinModelPortal: A6UUZ8 - SMR: A6UUZ8 - STRING: A6UUZ8 - GeneID: 5327653 - GenomeReviews: CP000743_GR - KEGG: mae:Maeo_0737 - eggNOG: arNOG07879 - HOGENOM: HBG515603 - OMA: MVVIADA - ProtClustDB: PRK00702 - BioCyc: MAEO419665:MAEO_0737-MONOMER - HAMAP: MF_00170 - InterPro: IPR004788 - InterPro: IPR020672 - PANTHER: PTHR11934 - TIGRFAMs: TIGR00021
Pfam domain/function: PF06026 Rib_5-P_isom_A
EC number: =5.3.1.6
Molecular weight: Translated: 25365; Mature: 25234
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKKAVKVEADPRLNAVNEALKFIKDGMIVGLGSGTTANLFIAELGKKISEEGLNVFGV CCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEC PTSFESRMMAIQYGIPLVSLDEYGELDIAVDGADEVNKETLNVIKGGGGCHTQEKIIDYC CCCHHHHEEEEEECCCEEEECCCCCEEEEECCCHHHCHHHHHHEECCCCCCHHHHHHHHH AKELIIIVDESKLVDSLGENTPVPLEVLPFAYSSVLNELLKMNSAPSIRMADKKMGPVIT HHHEEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEE DNGNMIIDVFIDLNNPEEVEKQLNNIPGVVENGIFTKVDKVIVGKSDKAEILKK CCCCEEEEEEEECCCHHHHHHHHHCCCCHHHCCCHHHHHHEEECCCCHHHHHCC >Mature Secondary Structure ARKKAVKVEADPRLNAVNEALKFIKDGMIVGLGSGTTANLFIAELGKKISEEGLNVFGV CCCCEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEC PTSFESRMMAIQYGIPLVSLDEYGELDIAVDGADEVNKETLNVIKGGGGCHTQEKIIDYC CCCHHHHEEEEEECCCEEEECCCCCEEEEECCCHHHCHHHHHHEECCCCCCHHHHHHHHH AKELIIIVDESKLVDSLGENTPVPLEVLPFAYSSVLNELLKMNSAPSIRMADKKMGPVIT HHHEEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEE DNGNMIIDVFIDLNNPEEVEKQLNNIPGVVENGIFTKVDKVIVGKSDKAEILKK CCCCEEEEEEEECCCHHHHHHHHHCCCCHHHCCCHHHHHHEEECCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA