| Definition | Methanococcus aeolicus Nankai-3, complete genome. |
|---|---|
| Accession | NC_009635 |
| Length | 1,569,500 |
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The map label for this gene is yjjK [C]
Identifier: 150401081
GI number: 150401081
Start: 668455
End: 670233
Strand: Reverse
Name: yjjK [C]
Synonym: Maeo_0651
Alternate gene names: 150401081
Gene position: 670233-668455 (Counterclockwise)
Preceding gene: 150401082
Following gene: 150401080
Centisome position: 42.7
GC content: 34.4
Gene sequence:
>1779_bases ATGACAGGAAGATTGGCAATTTTAGATTATGATAGATGTCAGCCCCGAAGATGCTCTACGGAATGTATGAAATACTGCCC GGGAGTTAGAATGGACGAAGAAACCATTGTTATGGACGAAGATTTGGGAAAACCGATAATTTCAGAAGAATTATGTGGTG GTTGTGGTATTTGTGTAAAAAGATGCCCATTTGCTGCAATAAATATAATTGGACTTCCAGGGGAGCTTACAGAGGATAAA ATAATACATTCCTACGGTAAAAATAGATTTAGGTTGTATGGGTTAATTACTCCAAGAGATGGAGTGGTTGGTATATTGGG TCCAAATGGTGTTGGTAAATCTACAATATTATCCATATTAAGCGGAATTACAACTCCAAATTTAAATAATTTAGATGAAG AGCCAAAATATGAAACAGTTATAAAACGGTTTTCAGGCACGGAGCTCCAAACATATTTTGAAAAATTATCAAAAAAAGAA ATAATTCCTATCCATAAACCGCAATATATTGATGCTCTTCCAAAGGTTGTAAAGGGAACCGTAGGGGAGCTCCTAAAAAA AGTAGATGAAAAGAGGATGTTTAATGAAATAATAGAAGTTCTTGAATTAAATAATTTACTTGATAGAAGTTTTGACCAAC TTTCCGGAGGGGAGCTCCAAAGGGTAGCAATTGCTGCGGCGTCATTAAGGGAAGGGGATATTTATTATTATGATGAACCT TCCTCATGGCTTGATGTTAGGCAGAGGTTTAATGCTGCAAAAATTATAAGAAAAATTGCCGAAAATAAAAAGGTTGTAGC AGTAGAGCACGATTTAATAGTTTTAGATTATCTTTCGGATAATATCCATATTATGTATGGTATTCCATCGGCTTATGGTG TTGTAACTCACCCCCGGGCAACAAGAACAGGAATAAATACATATCTTGATGGATTTTTAAGGGAGGAAAATATAAGAGTT AGAAAAAGCCCAATAGTATTTGAAAAAAGACCACCTATAAATTATACAAATCGTCCAGAATTGCTTAATTATTCAAAGGT ATCAAAAACCCTTGGTAATTTTAATTTAACCGTAGAGGGAGGGACAATTCATAAGGGAGAGGTTGTAGGTATATTGGGAC CAAATGGAATAGGTAAAACTACTTTTGCCAAAATACTTGCAGGAATAATAAAACCAGATAATGGTACGGTTTCAGCAAAA GAGGTAAAAATATCATACAAACCCCAATATATTGCAACAGATTTTGATGGGACAGTGAGGGATTTATTAATGAGTGTGGC AAATATAAACACTTCATTTTATAAATCTGAAATAATTAAGCCCCTTAGTTTAGAAAAAATAATGGATTTCGAAGTAAAAA ATTTATCTGGGGGGGAATTGCAAAGAGTGGCAATAGCTTCCTGTTTAAGTATGGATGCAGATATTTATTTAATTGATGAA CCATCTGCGTTTTTAGATGTAGAGCAGAGGTTGGTAGTATCTCGAACAATTAGGAGAATGGCGGACGAAAAAGAAGGGGC TATGTTTGTAATAGACCACGATATATTATTCCAAGATTATATTTCCGATAGATTTATAGTATTTAGTGGAGAAGCTGGAA AAATAGGGAAAGGTTCGGCACCATTGGATAAAAGAAGTGGAGCTAATAAATTTTTAAAGGAGATGAATATAACATTTAGG AGAGATGCAGAAACAGGAAGACCAAGGGTAAATAAAGAAGGTAGCCAAAGAGACCAATATCAAAAAGAAATTGGAGAATA TTATTATACGGAAGAATAA
Upstream 100 bases:
>100_bases ATTTTAGATGCTGGTGGATTAGTACAATATACAAAAAATAAGTTAAAAAAATAAGTTAAGAAATAGAAAACAAAATTTAA AATTTAAAAAAAGTGATATA
Downstream 100 bases:
>100_bases CGAAAATAGAAAATAGTCATTGATAACTATATGAAGTAAAATATTATTGAAAGAGTTCTTCCCACCGATATCAGATAAAT ATAAATAAACTGGGTTATAA
Product: putative ATPase RIL
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 592; Mature: 591
Protein sequence:
>592_residues MTGRLAILDYDRCQPRRCSTECMKYCPGVRMDEETIVMDEDLGKPIISEELCGGCGICVKRCPFAAINIIGLPGELTEDK IIHSYGKNRFRLYGLITPRDGVVGILGPNGVGKSTILSILSGITTPNLNNLDEEPKYETVIKRFSGTELQTYFEKLSKKE IIPIHKPQYIDALPKVVKGTVGELLKKVDEKRMFNEIIEVLELNNLLDRSFDQLSGGELQRVAIAAASLREGDIYYYDEP SSWLDVRQRFNAAKIIRKIAENKKVVAVEHDLIVLDYLSDNIHIMYGIPSAYGVVTHPRATRTGINTYLDGFLREENIRV RKSPIVFEKRPPINYTNRPELLNYSKVSKTLGNFNLTVEGGTIHKGEVVGILGPNGIGKTTFAKILAGIIKPDNGTVSAK EVKISYKPQYIATDFDGTVRDLLMSVANINTSFYKSEIIKPLSLEKIMDFEVKNLSGGELQRVAIASCLSMDADIYLIDE PSAFLDVEQRLVVSRTIRRMADEKEGAMFVIDHDILFQDYISDRFIVFSGEAGKIGKGSAPLDKRSGANKFLKEMNITFR RDAETGRPRVNKEGSQRDQYQKEIGEYYYTEE
Sequences:
>Translated_592_residues MTGRLAILDYDRCQPRRCSTECMKYCPGVRMDEETIVMDEDLGKPIISEELCGGCGICVKRCPFAAINIIGLPGELTEDK IIHSYGKNRFRLYGLITPRDGVVGILGPNGVGKSTILSILSGITTPNLNNLDEEPKYETVIKRFSGTELQTYFEKLSKKE IIPIHKPQYIDALPKVVKGTVGELLKKVDEKRMFNEIIEVLELNNLLDRSFDQLSGGELQRVAIAAASLREGDIYYYDEP SSWLDVRQRFNAAKIIRKIAENKKVVAVEHDLIVLDYLSDNIHIMYGIPSAYGVVTHPRATRTGINTYLDGFLREENIRV RKSPIVFEKRPPINYTNRPELLNYSKVSKTLGNFNLTVEGGTIHKGEVVGILGPNGIGKTTFAKILAGIIKPDNGTVSAK EVKISYKPQYIATDFDGTVRDLLMSVANINTSFYKSEIIKPLSLEKIMDFEVKNLSGGELQRVAIASCLSMDADIYLIDE PSAFLDVEQRLVVSRTIRRMADEKEGAMFVIDHDILFQDYISDRFIVFSGEAGKIGKGSAPLDKRSGANKFLKEMNITFR RDAETGRPRVNKEGSQRDQYQKEIGEYYYTEE >Mature_591_residues TGRLAILDYDRCQPRRCSTECMKYCPGVRMDEETIVMDEDLGKPIISEELCGGCGICVKRCPFAAINIIGLPGELTEDKI IHSYGKNRFRLYGLITPRDGVVGILGPNGVGKSTILSILSGITTPNLNNLDEEPKYETVIKRFSGTELQTYFEKLSKKEI IPIHKPQYIDALPKVVKGTVGELLKKVDEKRMFNEIIEVLELNNLLDRSFDQLSGGELQRVAIAAASLREGDIYYYDEPS SWLDVRQRFNAAKIIRKIAENKKVVAVEHDLIVLDYLSDNIHIMYGIPSAYGVVTHPRATRTGINTYLDGFLREENIRVR KSPIVFEKRPPINYTNRPELLNYSKVSKTLGNFNLTVEGGTIHKGEVVGILGPNGIGKTTFAKILAGIIKPDNGTVSAKE VKISYKPQYIATDFDGTVRDLLMSVANINTSFYKSEIIKPLSLEKIMDFEVKNLSGGELQRVAIASCLSMDADIYLIDEP SAFLDVEQRLVVSRTIRRMADEKEGAMFVIDHDILFQDYISDRFIVFSGEAGKIGKGSAPLDKRSGANKFLKEMNITFRR DAETGRPRVNKEGSQRDQYQKEIGEYYYTEE
Specific function: Unknown
COG id: COG1245
COG function: function code R; Predicted ATPase, RNase L inhibitor (RLI) homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI108773784, Length=597, Percent_Identity=44.3886097152429, Blast_Score=519, Evalue=1e-147, Organism=Homo sapiens, GI108773782, Length=597, Percent_Identity=44.3886097152429, Blast_Score=519, Evalue=1e-147, Organism=Escherichia coli, GI2367384, Length=497, Percent_Identity=26.3581488933602, Blast_Score=101, Evalue=1e-22, Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=30.2325581395349, Blast_Score=82, Evalue=8e-17, Organism=Escherichia coli, GI1790467, Length=198, Percent_Identity=29.2929292929293, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788165, Length=156, Percent_Identity=28.2051282051282, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1789891, Length=192, Percent_Identity=25.5208333333333, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1789593, Length=191, Percent_Identity=30.3664921465969, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1788002, Length=184, Percent_Identity=29.8913043478261, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI1786345, Length=224, Percent_Identity=27.2321428571429, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1787500, Length=213, Percent_Identity=27.6995305164319, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1786803, Length=209, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1787182, Length=192, Percent_Identity=29.6875, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI87081782, Length=159, Percent_Identity=28.9308176100629, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1786563, Length=199, Percent_Identity=25.1256281407035, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1790739, Length=212, Percent_Identity=24.5283018867925, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI87081709, Length=203, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1787370, Length=245, Percent_Identity=27.7551020408163, Blast_Score=66, Evalue=6e-12, Organism=Escherichia coli, GI1787112, Length=174, Percent_Identity=29.8850574712644, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786698, Length=209, Percent_Identity=29.1866028708134, Blast_Score=64, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17555800, Length=593, Percent_Identity=45.531197301855, Blast_Score=537, Evalue=1e-153, Organism=Saccharomyces cerevisiae, GI6320296, Length=603, Percent_Identity=46.2686567164179, Blast_Score=530, Evalue=1e-151, Organism=Drosophila melanogaster, GI24661270, Length=596, Percent_Identity=46.4765100671141, Blast_Score=530, Evalue=1e-150, Organism=Drosophila melanogaster, GI21355589, Length=596, Percent_Identity=46.4765100671141, Blast_Score=530, Evalue=1e-150, Organism=Drosophila melanogaster, GI116007184, Length=204, Percent_Identity=25.9803921568627, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI221500365, Length=204, Percent_Identity=25.9803921568627, Blast_Score=70, Evalue=5e-12, Organism=Drosophila melanogaster, GI24650986, Length=218, Percent_Identity=27.9816513761468, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI21358185, Length=218, Percent_Identity=27.9816513761468, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013283 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR007209 [H]
Pfam domain/function: PF00005 ABC_tran; PF04068 RLI [H]
EC number: NA
Molecular weight: Translated: 66521; Mature: 66390
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: PS00198 4FE4S_FERREDOXIN ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGRLAILDYDRCQPRRCSTECMKYCPGVRMDEETIVMDEDLGKPIISEELCGGCGICVK CCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCHHHH RCPFAAINIIGLPGELTEDKIIHSYGKNRFRLYGLITPRDGVVGILGPNGVGKSTILSIL HCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHH SGITTPNLNNLDEEPKYETVIKRFSGTELQTYFEKLSKKEIIPIHKPQYIDALPKVVKGT HCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH VGELLKKVDEKRMFNEIIEVLELNNLLDRSFDQLSGGELQRVAIAAASLREGDIYYYDEP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCC SSWLDVRQRFNAAKIIRKIAENKKVVAVEHDLIVLDYLSDNIHIMYGIPSAYGVVTHPRA CHHHHHHHHCCHHHHHHHHHCCCCEEEEECCEEEEEECCCCEEEEEECCCCCCEEECCCH TRTGINTYLDGFLREENIRVRKSPIVFEKRPPINYTNRPELLNYSKVSKTLGNFNLTVEG HHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEC GTIHKGEVVGILGPNGIGKTTFAKILAGIIKPDNGTVSAKEVKISYKPQYIATDFDGTVR CEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEEEECCCHHHH DLLMSVANINTSFYKSEIIKPLSLEKIMDFEVKNLSGGELQRVAIASCLSMDADIYLIDE HHHHHHHHCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC PSAFLDVEQRLVVSRTIRRMADEKEGAMFVIDHDILFQDYISDRFIVFSGEAGKIGKGSA CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCEEEEEECCCCCCCCCCC PLDKRSGANKFLKEMNITFRRDAETGRPRVNKEGSQRDQYQKEIGEYYYTEE CCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure TGRLAILDYDRCQPRRCSTECMKYCPGVRMDEETIVMDEDLGKPIISEELCGGCGICVK CCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCHHHH RCPFAAINIIGLPGELTEDKIIHSYGKNRFRLYGLITPRDGVVGILGPNGVGKSTILSIL HCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHH SGITTPNLNNLDEEPKYETVIKRFSGTELQTYFEKLSKKEIIPIHKPQYIDALPKVVKGT HCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH VGELLKKVDEKRMFNEIIEVLELNNLLDRSFDQLSGGELQRVAIAAASLREGDIYYYDEP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCC SSWLDVRQRFNAAKIIRKIAENKKVVAVEHDLIVLDYLSDNIHIMYGIPSAYGVVTHPRA CHHHHHHHHCCHHHHHHHHHCCCCEEEEECCEEEEEECCCCEEEEEECCCCCCEEECCCH TRTGINTYLDGFLREENIRVRKSPIVFEKRPPINYTNRPELLNYSKVSKTLGNFNLTVEG HHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEC GTIHKGEVVGILGPNGIGKTTFAKILAGIIKPDNGTVSAKEVKISYKPQYIATDFDGTVR CEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEEEECCCHHHH DLLMSVANINTSFYKSEIIKPLSLEKIMDFEVKNLSGGELQRVAIASCLSMDADIYLIDE HHHHHHHHCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC PSAFLDVEQRLVVSRTIRRMADEKEGAMFVIDHDILFQDYISDRFIVFSGEAGKIGKGSA CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCEEEEEECCCCCCCCCCC PLDKRSGANKFLKEMNITFRRDAETGRPRVNKEGSQRDQYQKEIGEYYYTEE CCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]