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The map label for this gene is ydcM [C]

Identifier: 150400729

GI number: 150400729

Start: 317881

End: 319155

Strand: Reverse

Name: ydcM [C]

Synonym: Maeo_0294

Alternate gene names: 150400729

Gene position: 319155-317881 (Counterclockwise)

Preceding gene: 150400730

Following gene: 150400728

Centisome position: 20.33

GC content: 32.47

Gene sequence:

>1275_bases
ATGTTGATGAACAACAGAGTAAATAATATGATGAGAACTTATAAGTTCAGGATTTACATATCCAAGAGTATCCAAGAAAC
AATAGAAGAGCACCTAAACATTTGTAGATACCTCTATAATTACCTTTTAGAACAAAAAACTAAAAATCCGAAACTAAACA
AAGGGGATACTCAAAAATTAATCACAGAGCATAAAAAGGAGAATCCTGAACTTAAAAAAGTCCATTCCAAAGCCCTTCAA
ATGGTAAATAATAAACTTTGGGGCAATCTCAAAGCATTGGGAAAACTAAAACAGAATGGACATAAAGTAGGTAAATTAAG
ATTCAAATCATCTAAAAATCACTATAAAACGATAGAATACAATCAATCAGGTTTTAAGATAAAGGATAACAAACTTTACC
TATCTAAAATAGGAGAAATTTCTATAAAACTACATAGAAAAATCAAAGGAGAAATTAAAGGAGTAATTATAAAAAAAGAA
TTAACAAACAAGTGGTTTGCTTTCTTTCAAGTGGAAGAAGAACCTAAACCACTACCTAAAACCAATAAGGTTGTAGGTAT
CGATTTAGGAATTGATGGTTATACCATCGATTCAGACGGAAACAAGTTTGAAAATCCCAAATTTATAGATGAAACATTAG
ATAAAATAAAGAAAGTCCAAAAGAACCTATCTCGAAAGGTTAGGGGTTCTAATAACTATAAAAAGACCAAATTAAAACTT
ATCAAGGTTTATGATAAACTAAATAATCAGAAAAATGATTTTCTACATAAATTATCAAGATACTACATAAACAATTATGA
TAAAATAGTTTTAGAGGATTTAAACATAAAATCAATGGTTGAAAACAAAAAAGGTCAGAAGACCTTAAACCGTCATATTC
TTGATGGTTCTTGGAAAAAATTTATAAACTTACTTCTTTATAAGGCGGAAGGTGCTGGTAGAGAAGTAATACTCATAAAT
CCTGCCTATACTTCTAAAAAATGTTTCAACTGCGGTTGTGTAGTTAGTAGTTTAAGATTGTCTGATAGAATCTTTTTTTG
TCCCAACTGCGGTTGGAAAATTGATAGGGATTACAACGCATCCTTGAATATATTAAAGTCAGGGCTAGGAGAGTCCGTTG
TGCCTGCGGAGGGGAGACCTCTACTCAGAGTTATACCTTATATAAAGGTAATCTCTGGGCAAGTATCTCCTATGAATCAG
GAAGCCTTGCCCGAAGGGCGAGGGCTACGAAAACCGAAAGGTTTTCGTTCAACCCCGTCCGTAAGGGAGGGGTAA

Upstream 100 bases:

>100_bases
TTTCCAGAAGTCAAAGAAAAACTATGGAAAAATGCACTATGGTCACCGTCGTATTTTCTGGCAACATCTGGACAAGTGAC
TCTCGATATGTTGAAAAAAT

Downstream 100 bases:

>100_bases
TTCACACTAATGCATATAAAACTATGATTATTTATTATTTAAGAGGGATTCAATGAATGATTGCCACTCAAAAGCAGATT
TGCATATTCATTCTAAATAT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MLMNNRVNNMMRTYKFRIYISKSIQETIEEHLNICRYLYNYLLEQKTKNPKLNKGDTQKLITEHKKENPELKKVHSKALQ
MVNNKLWGNLKALGKLKQNGHKVGKLRFKSSKNHYKTIEYNQSGFKIKDNKLYLSKIGEISIKLHRKIKGEIKGVIIKKE
LTNKWFAFFQVEEEPKPLPKTNKVVGIDLGIDGYTIDSDGNKFENPKFIDETLDKIKKVQKNLSRKVRGSNNYKKTKLKL
IKVYDKLNNQKNDFLHKLSRYYINNYDKIVLEDLNIKSMVENKKGQKTLNRHILDGSWKKFINLLLYKAEGAGREVILIN
PAYTSKKCFNCGCVVSSLRLSDRIFFCPNCGWKIDRDYNASLNILKSGLGESVVPAEGRPLLRVIPYIKVISGQVSPMNQ
EALPEGRGLRKPKGFRSTPSVREG

Sequences:

>Translated_424_residues
MLMNNRVNNMMRTYKFRIYISKSIQETIEEHLNICRYLYNYLLEQKTKNPKLNKGDTQKLITEHKKENPELKKVHSKALQ
MVNNKLWGNLKALGKLKQNGHKVGKLRFKSSKNHYKTIEYNQSGFKIKDNKLYLSKIGEISIKLHRKIKGEIKGVIIKKE
LTNKWFAFFQVEEEPKPLPKTNKVVGIDLGIDGYTIDSDGNKFENPKFIDETLDKIKKVQKNLSRKVRGSNNYKKTKLKL
IKVYDKLNNQKNDFLHKLSRYYINNYDKIVLEDLNIKSMVENKKGQKTLNRHILDGSWKKFINLLLYKAEGAGREVILIN
PAYTSKKCFNCGCVVSSLRLSDRIFFCPNCGWKIDRDYNASLNILKSGLGESVVPAEGRPLLRVIPYIKVISGQVSPMNQ
EALPEGRGLRKPKGFRSTPSVREG
>Mature_424_residues
MLMNNRVNNMMRTYKFRIYISKSIQETIEEHLNICRYLYNYLLEQKTKNPKLNKGDTQKLITEHKKENPELKKVHSKALQ
MVNNKLWGNLKALGKLKQNGHKVGKLRFKSSKNHYKTIEYNQSGFKIKDNKLYLSKIGEISIKLHRKIKGEIKGVIIKKE
LTNKWFAFFQVEEEPKPLPKTNKVVGIDLGIDGYTIDSDGNKFENPKFIDETLDKIKKVQKNLSRKVRGSNNYKKTKLKL
IKVYDKLNNQKNDFLHKLSRYYINNYDKIVLEDLNIKSMVENKKGQKTLNRHILDGSWKKFINLLLYKAEGAGREVILIN
PAYTSKKCFNCGCVVSSLRLSDRIFFCPNCGWKIDRDYNASLNILKSGLGESVVPAEGRPLLRVIPYIKVISGQVSPMNQ
EALPEGRGLRKPKGFRSTPSVREG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=375, Percent_Identity=30.1333333333333, Blast_Score=153, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 49087; Mature: 49087

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMNNRVNNMMRTYKFRIYISKSIQETIEEHLNICRYLYNYLLEQKTKNPKLNKGDTQKL
CCCCCHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
ITEHKKENPELKKVHSKALQMVNNKLWGNLKALGKLKQNGHKVGKLRFKSSKNHYKTIEY
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEECCCCCEEEEEE
NQSGFKIKDNKLYLSKIGEISIKLHRKIKGEIKGVIIKKELTNKWFAFFQVEEEPKPLPK
CCCCCEEECCEEEEECCCCEEEEEHHHHHCCCEEEEEEEHHCCCEEEEEEECCCCCCCCC
TNKVVGIDLGIDGYTIDSDGNKFENPKFIDETLDKIKKVQKNLSRKVRGSNNYKKTKLKL
CCCEEEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IKVYDKLNNQKNDFLHKLSRYYINNYDKIVLEDLNIKSMVENKKGQKTLNRHILDGSWKK
HHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCHHHHHHHHHCCCCHHH
FINLLLYKAEGAGREVILINPAYTSKKCFNCGCVVSSLRLSDRIFFCPNCGWKIDRDYNA
HHHHHEEECCCCCCEEEEECCCCCCCHHCCHHHHHHHHHHCCEEEECCCCCCEECCCCCC
SLNILKSGLGESVVPAEGRPLLRVIPYIKVISGQVSPMNQEALPEGRGLRKPKGFRSTPS
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
VREG
CCCC
>Mature Secondary Structure
MLMNNRVNNMMRTYKFRIYISKSIQETIEEHLNICRYLYNYLLEQKTKNPKLNKGDTQKL
CCCCCHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
ITEHKKENPELKKVHSKALQMVNNKLWGNLKALGKLKQNGHKVGKLRFKSSKNHYKTIEY
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEECCCCCEEEEEE
NQSGFKIKDNKLYLSKIGEISIKLHRKIKGEIKGVIIKKELTNKWFAFFQVEEEPKPLPK
CCCCCEEECCEEEEECCCCEEEEEHHHHHCCCEEEEEEEHHCCCEEEEEEECCCCCCCCC
TNKVVGIDLGIDGYTIDSDGNKFENPKFIDETLDKIKKVQKNLSRKVRGSNNYKKTKLKL
CCCEEEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IKVYDKLNNQKNDFLHKLSRYYINNYDKIVLEDLNIKSMVENKKGQKTLNRHILDGSWKK
HHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCHHHHHHHHHCCCCHHH
FINLLLYKAEGAGREVILINPAYTSKKCFNCGCVVSSLRLSDRIFFCPNCGWKIDRDYNA
HHHHHEEECCCCCCEEEEECCCCCCCHHCCHHHHHHHHHHCCEEEECCCCCCEECCCCCC
SLNILKSGLGESVVPAEGRPLLRVIPYIKVISGQVSPMNQEALPEGRGLRKPKGFRSTPS
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
VREG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]