Click here to switch to the map view.

The map label for this gene is rpoM [H]

Identifier: 150400651

GI number: 150400651

Start: 231436

End: 231747

Strand: Reverse

Name: rpoM [H]

Synonym: Maeo_0213

Alternate gene names: 150400651

Gene position: 231747-231436 (Counterclockwise)

Preceding gene: 150400652

Following gene: 150400647

Centisome position: 14.77

GC content: 32.69

Gene sequence:

>312_bases
ATGGTAAAATTTTGTCCTAAATGTAATAATATTATGCTTCCAAAAGAAGATAATTTAGTATGCACAGTTTGCGGATTTGA
GGAGGAACTTGAAAAAACTGAATCATATGAATTAAAAGAAAAATTAGAAACCAAACAGGAAATAGTAGTTATAGAAGATG
TGAATACACTTCCAACAACAAGAATTGAATGCCCAAACTGCGGAAATATGGAGGTATATTGGTGGCTTCAACAAACTAGA
TGTGCCGATGAGCCAGAAACAAGATTTTATAAATGTACAAAATGCGGACACACTTGGAGAGAATACGATTAA

Upstream 100 bases:

>100_bases
GTTTAAAATTGAAGACATAAAACAATTAAACCTTGCCTTTGATCATAAGCGAATATTTGAAGATTATTTAAAGAAATATA
AATAAAATATAGGTGATAAT

Downstream 100 bases:

>100_bases
AAAATAAAAAATCATGCATGGTTTGTTCGGGAAATTTTTATATCCCAAAACTCCGAAGGAGTTTTTATGATTTTATGGTG
GGTCCAACAACTATCCGTTG

Product: transcription termination factor Tfs

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MVKFCPKCNNIMLPKEDNLVCTVCGFEEELEKTESYELKEKLETKQEIVVIEDVNTLPTTRIECPNCGNMEVYWWLQQTR
CADEPETRFYKCTKCGHTWREYD

Sequences:

>Translated_103_residues
MVKFCPKCNNIMLPKEDNLVCTVCGFEEELEKTESYELKEKLETKQEIVVIEDVNTLPTTRIECPNCGNMEVYWWLQQTR
CADEPETRFYKCTKCGHTWREYD
>Mature_103_residues
MVKFCPKCNNIMLPKEDNLVCTVCGFEEELEKTESYELKEKLETKQEIVVIEDVNTLPTTRIECPNCGNMEVYWWLQQTR
CADEPETRFYKCTKCGHTWREYD

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIS-type zinc finger [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320250, Length=109, Percent_Identity=36.697247706422, Blast_Score=77, Evalue=6e-16,
Organism=Drosophila melanogaster, GI78707272, Length=108, Percent_Identity=34.2592592592593, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019761
- InterPro:   IPR001529
- InterPro:   IPR006288
- InterPro:   IPR001222 [H]

Pfam domain/function: PF02150 RNA_POL_M_15KD; PF01096 TFIIS_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 12268; Mature: 12268

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00466 ZF_TFIIS_1 ; PS51133 ZF_TFIIS_2 ; PS01030 RNA_POL_M_15KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
11.7 %Cys+Met (Translated Protein)
8.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
11.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKFCPKCNNIMLPKEDNLVCTVCGFEEELEKTESYELKEKLETKQEIVVIEDVNTLPTT
CCCCCCCCCCEECCCCCCEEEEEECCHHHHHHCCCHHHHHHCCCCCEEEEEECCCCCCCC
RIECPNCGNMEVYWWLQQTRCADEPETRFYKCTKCGHTWREYD
EEECCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MVKFCPKCNNIMLPKEDNLVCTVCGFEEELEKTESYELKEKLETKQEIVVIEDVNTLPTT
CCCCCCCCCCEECCCCCCEEEEEECCHHHHHHCCCHHHHHHCCCCCEEEEEECCCCCCCC
RIECPNCGNMEVYWWLQQTRCADEPETRFYKCTKCGHTWREYD
EEECCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]