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The map label for this gene is yggB [C]

Identifier: 150400426

GI number: 150400426

Start: 1707273

End: 1708343

Strand: Reverse

Name: yggB [C]

Synonym: Mevan_1689

Alternate gene names: 150400426

Gene position: 1708343-1707273 (Counterclockwise)

Preceding gene: 150400427

Following gene: 150400423

Centisome position: 99.32

GC content: 30.53

Gene sequence:

>1071_bases
ATGTTTGAATTATTTTTTAGTCTAGATGGTTCATTTTATGGATTACCCCATATGTCAATTATAAAATTAGTAAGTATTAT
AGCTTTAGGGCTTTTACTATCCCATTTTATTGAAAAACAGCTGAAAGTACTTTCAGAAAATACCAAACACCCTTGGATAT
TAAATGAAGATACTGCAGGATTAGTTTCAATATTTATTCTTGCAATATTCGTAATTTTTGCATTAAACGTCCTAGAAGGG
TTATTTTCATATGAAGTCTTTGGTTTTGACTTAAAATCTTTGATTTACTCCTTTTTAATTATTTATTTTTCATACCGAAT
ATCTAACCGTTCCAAACGATATTTACTTGTAAAGGGGGCCCAGGAAGGAAAATTTGTAGAATACCGGTTAAAAGCATCAT
TATTTAATTACCTTGTAATGATTATTGCTTTTGGAATTAGCTTTCAAATATTGGGATTAACTGACCGTTTAGGTACATTA
CTAGTTGCAGGGGGAATTACGGGTATAATATTAGGTTTTGCATCACAAACGGTTGTTTCAAACTTTATATCCGGAATATT
TCTTTATTTTGACAAACCGTTGAAAATTGGTGATTCAGTTGAAATTGGAAATAAATCTGGAATGGTAAATGACATTAAAA
TGATGTCGACTAGAATAAGAACTTGGGATGGAGTATTAGTTAGAATTCCTAACGAAAAAGTTTTTAATTCAGAGATAATT
AATAACAAAAAGTATCCCGCAAGACGTGCAGAAGTCACAATTGGAATTGCATATAAAGAAGATATAGACCGTGCAGTTGA
AATTATAGTAAAAGTACTTCGAGAAATGACTTATGTACTTGTTGAACCAGAACCCGTAGTTTTTGCAAATAATTTAGGAG
ATAGTAGTGTAGATATTACAGTTAGAGCATGGGCGCCAACGGAAAAATGGCTAGATATTAGAAAAGAAATGATAAGAAAT
ATTAAAAAAGCCCTTGATAACGAAAAAATTGAAATTCCATTCCCACAGCGAACAATTTGGTTCCCAAATGACCTAAATAT
CAAATTAAATGATGAAAAAAAGGATAAATAA

Upstream 100 bases:

>100_bases
GAAACGTTGAGATGATAAATACTATAAAATCCCCGAAATCAGGATTGAATGGGACTAAAAACGTTACTCCAGTAAGCGGT
TTTTTAAGGAGAATCTAAAA

Downstream 100 bases:

>100_bases
TTATTAAAATCTCATAATTATTTTAAAATATAACTATTTTTAAATTAAACTAAAAACATAAGTGAAGCTAAATTTCTTCA
AGTATGTCATCAACCTTATT

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MFELFFSLDGSFYGLPHMSIIKLVSIIALGLLLSHFIEKQLKVLSENTKHPWILNEDTAGLVSIFILAIFVIFALNVLEG
LFSYEVFGFDLKSLIYSFLIIYFSYRISNRSKRYLLVKGAQEGKFVEYRLKASLFNYLVMIIAFGISFQILGLTDRLGTL
LVAGGITGIILGFASQTVVSNFISGIFLYFDKPLKIGDSVEIGNKSGMVNDIKMMSTRIRTWDGVLVRIPNEKVFNSEII
NNKKYPARRAEVTIGIAYKEDIDRAVEIIVKVLREMTYVLVEPEPVVFANNLGDSSVDITVRAWAPTEKWLDIRKEMIRN
IKKALDNEKIEIPFPQRTIWFPNDLNIKLNDEKKDK

Sequences:

>Translated_356_residues
MFELFFSLDGSFYGLPHMSIIKLVSIIALGLLLSHFIEKQLKVLSENTKHPWILNEDTAGLVSIFILAIFVIFALNVLEG
LFSYEVFGFDLKSLIYSFLIIYFSYRISNRSKRYLLVKGAQEGKFVEYRLKASLFNYLVMIIAFGISFQILGLTDRLGTL
LVAGGITGIILGFASQTVVSNFISGIFLYFDKPLKIGDSVEIGNKSGMVNDIKMMSTRIRTWDGVLVRIPNEKVFNSEII
NNKKYPARRAEVTIGIAYKEDIDRAVEIIVKVLREMTYVLVEPEPVVFANNLGDSSVDITVRAWAPTEKWLDIRKEMIRN
IKKALDNEKIEIPFPQRTIWFPNDLNIKLNDEKKDK
>Mature_356_residues
MFELFFSLDGSFYGLPHMSIIKLVSIIALGLLLSHFIEKQLKVLSENTKHPWILNEDTAGLVSIFILAIFVIFALNVLEG
LFSYEVFGFDLKSLIYSFLIIYFSYRISNRSKRYLLVKGAQEGKFVEYRLKASLFNYLVMIIAFGISFQILGLTDRLGTL
LVAGGITGIILGFASQTVVSNFISGIFLYFDKPLKIGDSVEIGNKSGMVNDIKMMSTRIRTWDGVLVRIPNEKVFNSEII
NNKKYPARRAEVTIGIAYKEDIDRAVEIIVKVLREMTYVLVEPEPVVFANNLGDSSVDITVRAWAPTEKWLDIRKEMIRN
IKKALDNEKIEIPFPQRTIWFPNDLNIKLNDEKKDK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=266, Percent_Identity=29.3233082706767, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786670, Length=230, Percent_Identity=30, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787591, Length=215, Percent_Identity=30.6976744186047, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI2367355, Length=205, Percent_Identity=28.780487804878, Blast_Score=88, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 40618; Mature: 40618

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFELFFSLDGSFYGLPHMSIIKLVSIIALGLLLSHFIEKQLKVLSENTKHPWILNEDTAG
CEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHH
LVSIFILAIFVIFALNVLEGLFSYEVFGFDLKSLIYSFLIIYFSYRISNRSKRYLLVKGA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
QEGKFVEYRLKASLFNYLVMIIAFGISFQILGLTDRLGTLLVAGGITGIILGFASQTVVS
CCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHH
NFISGIFLYFDKPLKIGDSVEIGNKSGMVNDIKMMSTRIRTWDGVLVRIPNEKVFNSEII
HHHHHHEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
NNKKYPARRAEVTIGIAYKEDIDRAVEIIVKVLREMTYVLVEPEPVVFANNLGDSSVDIT
CCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCCCCEEEE
VRAWAPTEKWLDIRKEMIRNIKKALDNEKIEIPFPQRTIWFPNDLNIKLNDEKKDK
EEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCEEEECCCCCCC
>Mature Secondary Structure
MFELFFSLDGSFYGLPHMSIIKLVSIIALGLLLSHFIEKQLKVLSENTKHPWILNEDTAG
CEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHH
LVSIFILAIFVIFALNVLEGLFSYEVFGFDLKSLIYSFLIIYFSYRISNRSKRYLLVKGA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
QEGKFVEYRLKASLFNYLVMIIAFGISFQILGLTDRLGTLLVAGGITGIILGFASQTVVS
CCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHH
NFISGIFLYFDKPLKIGDSVEIGNKSGMVNDIKMMSTRIRTWDGVLVRIPNEKVFNSEII
HHHHHHEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
NNKKYPARRAEVTIGIAYKEDIDRAVEIIVKVLREMTYVLVEPEPVVFANNLGDSSVDIT
CCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCCCCEEEE
VRAWAPTEKWLDIRKEMIRNIKKALDNEKIEIPFPQRTIWFPNDLNIKLNDEKKDK
EEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]