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The map label for this gene is xerD [C]

Identifier: 150400384

GI number: 150400384

Start: 1667373

End: 1668341

Strand: Reverse

Name: xerD [C]

Synonym: Mevan_1647

Alternate gene names: 150400384

Gene position: 1668341-1667373 (Counterclockwise)

Preceding gene: 150400385

Following gene: 150400383

Centisome position: 96.99

GC content: 33.64

Gene sequence:

>969_bases
ATGCAAAATATTAAAAATCTTATCTTATTAAATCCGAAAAAAGAAGAAATCAAAGAAACGCCCAAATTAAAAAAATGGAT
TGATAAATACGTTTCAGAACGAGAATTTGACGGAATAAAAGAAAGTACTATCGAAGGGGACCTCAACCGTTTAAAAGTAT
TCTTAAATTTTGGATACGAACGGCTCGAAAAAGAACCGAATGATATGGAAAACTCGGACTTTGTCAGATTCTTCAATTAC
CTTGAAAACGAAAGGAAACTTTCAAGAAATACCCAAAAAAGATACTACGACGTTTTAAAAGTGTTTTACAAACTAATGAG
ACTCGAAAACCTAAACGACTTTAAAAATGAAAGTGAAGATAGGAAAAGATTTTCGAGTTTTGAAATAAAGCATTACGATT
CATTAGGCGCAGACATTTTAAACTTGATTTTAATGGAAGTTCTAGAATCAAGAAGCACTACAAAAGTTAGAGATGCAATG
ATAATCCGGTTTTTATGGGATACGGGTGCAAGAGTTTCTGAAGCCTTGAATCTAAAATATGGGGACAGTGATTTAGAAAA
AGGGGAATTCAGATTAAGAGACACCAAAGGAAAAGAAGAAAGAATCGTTACCTGCTCAAAAGACACGTTAGATTTTGTAA
ATTACTGTTTAAAAGCAAATATTAAGAAAAACCCTGGAGACAACTTATTCCAAACCTATAGGGGCGAACCATTAAAAAGA
AACCGTCCGAGCGATGTTTTTCGAAATGCGGTCAAAGAATTAAAGAAAAAGGGAAAACTTCAGGATAACAAAAGAGTAGT
AATCCACAGTTTAAGACATGGTCGAGCAGTAGATCTCCTGGACAAAGGTATGCCAATTGATATTGTAAAAGAGTACCTCG
GTCACAAGTCCATTGAAACTACGCTATACTACTCCCACTCTAAGGAAAGACAGCAAAAAATGCTAAATCAAATTAAAAAG
ATTTTATAG

Upstream 100 bases:

>100_bases
TAATTTTTGTAAACTTAAAATAACAATTTTCGAAGATGAGGACGGCGGAAAGCGCCTATCCTACTAAAAACACTACAAAA
TTAGCTAACGGGGAATTATC

Downstream 100 bases:

>100_bases
GGTGGGAAAATGAGGAGCATAAGCCAGGTGCAAAAAGATGTACTTATCAAAGAAGCCCAAAAGGAACTAGCAGAAAAAAG
TGCAAAACGTATAGAATTAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MQNIKNLILLNPKKEEIKETPKLKKWIDKYVSEREFDGIKESTIEGDLNRLKVFLNFGYERLEKEPNDMENSDFVRFFNY
LENERKLSRNTQKRYYDVLKVFYKLMRLENLNDFKNESEDRKRFSSFEIKHYDSLGADILNLILMEVLESRSTTKVRDAM
IIRFLWDTGARVSEALNLKYGDSDLEKGEFRLRDTKGKEERIVTCSKDTLDFVNYCLKANIKKNPGDNLFQTYRGEPLKR
NRPSDVFRNAVKELKKKGKLQDNKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSIETTLYYSHSKERQQKMLNQIKK
IL

Sequences:

>Translated_322_residues
MQNIKNLILLNPKKEEIKETPKLKKWIDKYVSEREFDGIKESTIEGDLNRLKVFLNFGYERLEKEPNDMENSDFVRFFNY
LENERKLSRNTQKRYYDVLKVFYKLMRLENLNDFKNESEDRKRFSSFEIKHYDSLGADILNLILMEVLESRSTTKVRDAM
IIRFLWDTGARVSEALNLKYGDSDLEKGEFRLRDTKGKEERIVTCSKDTLDFVNYCLKANIKKNPGDNLFQTYRGEPLKR
NRPSDVFRNAVKELKKKGKLQDNKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSIETTLYYSHSKERQQKMLNQIKK
IL
>Mature_322_residues
MQNIKNLILLNPKKEEIKETPKLKKWIDKYVSEREFDGIKESTIEGDLNRLKVFLNFGYERLEKEPNDMENSDFVRFFNY
LENERKLSRNTQKRYYDVLKVFYKLMRLENLNDFKNESEDRKRFSSFEIKHYDSLGADILNLILMEVLESRSTTKVRDAM
IIRFLWDTGARVSEALNLKYGDSDLEKGEFRLRDTKGKEERIVTCSKDTLDFVNYCLKANIKKNPGDNLFQTYRGEPLKR
NRPSDVFRNAVKELKKKGKLQDNKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSIETTLYYSHSKERQQKMLNQIKK
IL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=167, Percent_Identity=27.5449101796407, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38283; Mature: 38283

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNIKNLILLNPKKEEIKETPKLKKWIDKYVSEREFDGIKESTIEGDLNRLKVFLNFGYE
CCCCCCEEEECCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH
RLEKEPNDMENSDFVRFFNYLENERKLSRNTQKRYYDVLKVFYKLMRLENLNDFKNESED
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHH
RKRFSSFEIKHYDSLGADILNLILMEVLESRSTTKVRDAMIIRFLWDTGARVSEALNLKY
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCC
GDSDLEKGEFRLRDTKGKEERIVTCSKDTLDFVNYCLKANIKKNPGDNLFQTYRGEPLKR
CCCCCCCCCEEEECCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC
NRPSDVFRNAVKELKKKGKLQDNKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSIET
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHCCCCHHHHHHHHCCCCHHH
TLYYSHSKERQQKMLNQIKKIL
HEEECCCHHHHHHHHHHHHHHC
>Mature Secondary Structure
MQNIKNLILLNPKKEEIKETPKLKKWIDKYVSEREFDGIKESTIEGDLNRLKVFLNFGYE
CCCCCCEEEECCCHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH
RLEKEPNDMENSDFVRFFNYLENERKLSRNTQKRYYDVLKVFYKLMRLENLNDFKNESED
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHH
RKRFSSFEIKHYDSLGADILNLILMEVLESRSTTKVRDAMIIRFLWDTGARVSEALNLKY
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCC
GDSDLEKGEFRLRDTKGKEERIVTCSKDTLDFVNYCLKANIKKNPGDNLFQTYRGEPLKR
CCCCCCCCCEEEECCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC
NRPSDVFRNAVKELKKKGKLQDNKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSIET
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHCCCCHHHHHHHHCCCCHHH
TLYYSHSKERQQKMLNQIKKIL
HEEECCCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]