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The map label for this gene is yjiM [C]

Identifier: 150400360

GI number: 150400360

Start: 1639230

End: 1640351

Strand: Reverse

Name: yjiM [C]

Synonym: Mevan_1623

Alternate gene names: 150400360

Gene position: 1640351-1639230 (Counterclockwise)

Preceding gene: 150400363

Following gene: 150400356

Centisome position: 95.37

GC content: 30.57

Gene sequence:

>1122_bases
ATGGATGAATTAAAAAGCATTAAAAAAATTGATGACTTTTATTTTACAAGAAAAAAAGAGCTAATTTTTGAAAAGAAAGG
CGGAAAAAAAATTTTTGGTAAATTTTGTGTTTTTGTTCCAACCGAAATTATTGAAGCGTCGGGAGGAATTTCAGTTGGAC
TTTGTGGTGGAAAAGAGTCTACGATAGCTACTGCAGAAGAAGACTTACCAAGAAACATCTGTCCACTAATCAAGTCTTCT
TACGGGTTTATAAAAGAAAAAAATTGCCCTTACTTTGAATTAGCAGACGTTATTGTCGGCGAAACCACGTGTGATGGGAA
GAAAAAAATGTTTGAGCACTTAATGGAACTTTCAAATTTGTATATTATACACCTTCCCCATTTTAAAGATGAACGATCAT
ACGAACTATGGTTAAAAGAAGTACATGATTTTAAAGAATATGTTGAAAAAATAACTGGAAATAAGATTACAGATGAAAAA
TTAAAAGAAGTAATTGACAGGGAAAACGAAGAAAGAAAATTATATTACCGAGTTTATGAATTAAGGAAAAATATACCTAC
ACCAATAAATGGAATGGATTCATTAAAATTATTCCAAAAGTTATCCCTACTTAAAATACAAGATCGAATTAAACTATTAA
AAGAACTAATATTGGAACTCGAAAAAAGAGTTGAGAATAATTACGGATATTACGGGAAAAGAATTATGATTTCAGGGTGC
CCGATGGTTTTTGGAAATACTAAAATCGTTGATTTAATTGAAGAAGTTGGCGGAATTGTTGTTGGCGAAGAAACATGTAC
TGGAACAAGAAAATTTGAAAATTTGGTTAATGGGTACAGTATTGAAGACCTTGCAAAAAGGTATTTTAAAATATCTTGTG
CTTCAGGATTTAACAATAAAATCAGGATGGAAAGAATTAAAGAACTTGTAAATGAACAAAATGCTGACGGCGTTATATAC
TATACACTACAATACTGCCATACATTTAATATCGAAGGCGTTTTAATTGAAAAAGAACTAAAAAAAGAAGGCATTCCAAT
TATTAGGATAGAAACCGATTATTCTGAGAATGACATTGAACAGTTACGAACTAGGCTTGAGGCCTTTTTAGAAATGATTT
AA

Upstream 100 bases:

>100_bases
TTTTATACAGAATACTTTTAACAAAAAATTTTAAAAAATGATTTTAAATACATTAATGCTTTGTAAATTTTTAAATAGTT
AAAAAAAGGAGGTGGGCAAA

Downstream 100 bases:

>100_bases
TTTTTAAAATATTTTAATCCCTGTAAGTTTTCGGCAGTTTTCAAATTTTAAGCATTTAAAAAGCTTTTATAAACCAAAAA
TGGGATAGAAGTAAAAGTTA

Product: 2-hydroxyglutaryl-CoA dehydratase subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MDELKSIKKIDDFYFTRKKELIFEKKGGKKIFGKFCVFVPTEIIEASGGISVGLCGGKESTIATAEEDLPRNICPLIKSS
YGFIKEKNCPYFELADVIVGETTCDGKKKMFEHLMELSNLYIIHLPHFKDERSYELWLKEVHDFKEYVEKITGNKITDEK
LKEVIDRENEERKLYYRVYELRKNIPTPINGMDSLKLFQKLSLLKIQDRIKLLKELILELEKRVENNYGYYGKRIMISGC
PMVFGNTKIVDLIEEVGGIVVGEETCTGTRKFENLVNGYSIEDLAKRYFKISCASGFNNKIRMERIKELVNEQNADGVIY
YTLQYCHTFNIEGVLIEKELKKEGIPIIRIETDYSENDIEQLRTRLEAFLEMI

Sequences:

>Translated_373_residues
MDELKSIKKIDDFYFTRKKELIFEKKGGKKIFGKFCVFVPTEIIEASGGISVGLCGGKESTIATAEEDLPRNICPLIKSS
YGFIKEKNCPYFELADVIVGETTCDGKKKMFEHLMELSNLYIIHLPHFKDERSYELWLKEVHDFKEYVEKITGNKITDEK
LKEVIDRENEERKLYYRVYELRKNIPTPINGMDSLKLFQKLSLLKIQDRIKLLKELILELEKRVENNYGYYGKRIMISGC
PMVFGNTKIVDLIEEVGGIVVGEETCTGTRKFENLVNGYSIEDLAKRYFKISCASGFNNKIRMERIKELVNEQNADGVIY
YTLQYCHTFNIEGVLIEKELKKEGIPIIRIETDYSENDIEQLRTRLEAFLEMI
>Mature_373_residues
MDELKSIKKIDDFYFTRKKELIFEKKGGKKIFGKFCVFVPTEIIEASGGISVGLCGGKESTIATAEEDLPRNICPLIKSS
YGFIKEKNCPYFELADVIVGETTCDGKKKMFEHLMELSNLYIIHLPHFKDERSYELWLKEVHDFKEYVEKITGNKITDEK
LKEVIDRENEERKLYYRVYELRKNIPTPINGMDSLKLFQKLSLLKIQDRIKLLKELILELEKRVENNYGYYGKRIMISGC
PMVFGNTKIVDLIEEVGGIVVGEETCTGTRKFENLVNGYSIEDLAKRYFKISCASGFNNKIRMERIKELVNEQNADGVIY
YTLQYCHTFNIEGVLIEKELKKEGIPIIRIETDYSENDIEQLRTRLEAFLEMI

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiM [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=360, Percent_Identity=39.4444444444444, Blast_Score=265, Evalue=4e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 43405; Mature: 43405

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELKSIKKIDDFYFTRKKELIFEKKGGKKIFGKFCVFVPTEIIEASGGISVGLCGGKES
CCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCHHHHHCCCCEEEEEECCCCC
TIATAEEDLPRNICPLIKSSYGFIKEKNCPYFELADVIVGETTCDGKKKMFEHLMELSNL
CCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCE
YIIHLPHFKDERSYELWLKEVHDFKEYVEKITGNKITDEKLKEVIDRENEERKLYYRVYE
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
LRKNIPTPINGMDSLKLFQKLSLLKIQDRIKLLKELILELEKRVENNYGYYGKRIMISGC
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEEECC
PMVFGNTKIVDLIEEVGGIVVGEETCTGTRKFENLVNGYSIEDLAKRYFKISCASGFNNK
CEEECCCHHHHHHHHHCCEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHEEEECCCCCCC
IRMERIKELVNEQNADGVIYYTLQYCHTFNIEGVLIEKELKKEGIPIIRIETDYSENDIE
HHHHHHHHHHCCCCCCCEEEEEEEEHEECCCCEEEEEHHHHHCCCCEEEEECCCCCCHHH
QLRTRLEAFLEMI
HHHHHHHHHHHCC
>Mature Secondary Structure
MDELKSIKKIDDFYFTRKKELIFEKKGGKKIFGKFCVFVPTEIIEASGGISVGLCGGKES
CCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCHHHHHCCCCEEEEEECCCCC
TIATAEEDLPRNICPLIKSSYGFIKEKNCPYFELADVIVGETTCDGKKKMFEHLMELSNL
CCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCE
YIIHLPHFKDERSYELWLKEVHDFKEYVEKITGNKITDEKLKEVIDRENEERKLYYRVYE
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
LRKNIPTPINGMDSLKLFQKLSLLKIQDRIKLLKELILELEKRVENNYGYYGKRIMISGC
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEEECC
PMVFGNTKIVDLIEEVGGIVVGEETCTGTRKFENLVNGYSIEDLAKRYFKISCASGFNNK
CEEECCCHHHHHHHHHCCEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHEEEECCCCCCC
IRMERIKELVNEQNADGVIYYTLQYCHTFNIEGVLIEKELKKEGIPIIRIETDYSENDIE
HHHHHHHHHHCCCCCCCEEEEEEEEHEECCCCEEEEEHHHHHCCCCEEEEECCCCCCHHH
QLRTRLEAFLEMI
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]