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The map label for this gene is yjiM [C]

Identifier: 150400098

GI number: 150400098

Start: 1383186

End: 1384307

Strand: Reverse

Name: yjiM [C]

Synonym: Mevan_1356

Alternate gene names: 150400098

Gene position: 1384307-1383186 (Counterclockwise)

Preceding gene: 150400099

Following gene: 150400097

Centisome position: 80.48

GC content: 31.37

Gene sequence:

>1122_bases
ATGGATGGTTTAAAGTCGATTGATGAATTAAATAATGCATTTTCAAAAAGAAGGGATGAATTATACGGTCAAAAAAATGA
TGGAAAAAAGGTATTCGGATTGTTTTGTACATTTGTACCTACTGAATTAATTTTAGCAGCTGATGCAATTCCGGTTGGAC
TTTGTGGTGGGAAAGAAGTGACAATTCCTTCAGCAGAAGAAGATTTACCGAGAAATATTTGCCCTTTAATCAAATCATCA
TATGGATTTAAAAAAGACAAAGCCTGCCCATACATTGAAGCTTCTGACATTATTATTGGAGAAACTACTTGTGATGGAAA
GAAAAAAATGTTTGAACACATGTCTGAAATGGTAAAACTGCATGTTATGCAATTGCCACATTTTAGAGATGAAAGATCTG
CTAAATTATGGTTGGAAGAAGTAAGGGATTTAAAAGAACTAATTGAAGAAGAAACAGGGAACAAAATTACTGAAGAAAAG
TTAAAAGAAGCCATTGATAAAGTAAATAAGTTAAGAGAATTGTTTTATAAGGTTTATGAACTTAGGAGAAATAAAATAAG
CCCTATAAAGGGAACTGACGCTTTAAAATTATTCCAAATGTCTTATCTTTTAGATATAAATACGATTACTGGAATTATTG
AAAATTTAATTAATGAACTCGAAGAAAGAGTTGAAAATAATGAAGGTTACTCTGGAAAAAGAATATTAATTGCAGGATGC
CCAATGGTTGCTGGAAACACCAAAATTCCAGAAATAGTCGAAAATATCGGTGGAGTAGTCGTTGGAGAAGAATCATGTAC
CGGAACTAGGCAGTTTGAAAATTATGTTGAAGGATACTCAATTGAAGATTTATCTAGCCGATATTTTAAAATTCCTTGTG
CTTGCACCTATAGTAATGAAGATAGAATTAAAAGACTCAAGGAATTAGTAGATGAACAGAAAGCAGATGGCGTAATATAC
TATACTCTTCAAAACTGTCATACTTTTAATATTGAAGGAGCATTAGTCGAGAAAAAATTAAAAGAAGTGGGTATACCAAT
AGTAAGAATAGAAACCGATTATTCTGAAAGCGATAAAGAACAGATAAAAACAAGGCTTGAAGCATTTTTAGAAATGATTT
AA

Upstream 100 bases:

>100_bases
TATATAAATCATTTTTATAATTAAGGTTTTTTTCGTGGAAATTATCCACACATTAGAAAATCTAATATATAAGTACTATT
TAAAATTTCTGGTGGAAAAT

Downstream 100 bases:

>100_bases
ATACATAAACTCAATTTATTTTTTAGTTTTTAAGGTGGTAATTTGAAATTCTATAATTTAATCATATCACTACTCATAAT
TTCAACATTATGTTTAAGTG

Product: 2-hydroxyglutaryl-CoA dehydratase subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MDGLKSIDELNNAFSKRRDELYGQKNDGKKVFGLFCTFVPTELILAADAIPVGLCGGKEVTIPSAEEDLPRNICPLIKSS
YGFKKDKACPYIEASDIIIGETTCDGKKKMFEHMSEMVKLHVMQLPHFRDERSAKLWLEEVRDLKELIEEETGNKITEEK
LKEAIDKVNKLRELFYKVYELRRNKISPIKGTDALKLFQMSYLLDINTITGIIENLINELEERVENNEGYSGKRILIAGC
PMVAGNTKIPEIVENIGGVVVGEESCTGTRQFENYVEGYSIEDLSSRYFKIPCACTYSNEDRIKRLKELVDEQKADGVIY
YTLQNCHTFNIEGALVEKKLKEVGIPIVRIETDYSESDKEQIKTRLEAFLEMI

Sequences:

>Translated_373_residues
MDGLKSIDELNNAFSKRRDELYGQKNDGKKVFGLFCTFVPTELILAADAIPVGLCGGKEVTIPSAEEDLPRNICPLIKSS
YGFKKDKACPYIEASDIIIGETTCDGKKKMFEHMSEMVKLHVMQLPHFRDERSAKLWLEEVRDLKELIEEETGNKITEEK
LKEAIDKVNKLRELFYKVYELRRNKISPIKGTDALKLFQMSYLLDINTITGIIENLINELEERVENNEGYSGKRILIAGC
PMVAGNTKIPEIVENIGGVVVGEESCTGTRQFENYVEGYSIEDLSSRYFKIPCACTYSNEDRIKRLKELVDEQKADGVIY
YTLQNCHTFNIEGALVEKKLKEVGIPIVRIETDYSESDKEQIKTRLEAFLEMI
>Mature_373_residues
MDGLKSIDELNNAFSKRRDELYGQKNDGKKVFGLFCTFVPTELILAADAIPVGLCGGKEVTIPSAEEDLPRNICPLIKSS
YGFKKDKACPYIEASDIIIGETTCDGKKKMFEHMSEMVKLHVMQLPHFRDERSAKLWLEEVRDLKELIEEETGNKITEEK
LKEAIDKVNKLRELFYKVYELRRNKISPIKGTDALKLFQMSYLLDINTITGIIENLINELEERVENNEGYSGKRILIAGC
PMVAGNTKIPEIVENIGGVVVGEESCTGTRQFENYVEGYSIEDLSSRYFKIPCACTYSNEDRIKRLKELVDEQKADGVIY
YTLQNCHTFNIEGALVEKKLKEVGIPIVRIETDYSESDKEQIKTRLEAFLEMI

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiM [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=355, Percent_Identity=39.7183098591549, Blast_Score=274, Evalue=7e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 42499; Mature: 42499

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGLKSIDELNNAFSKRRDELYGQKNDGKKVFGLFCTFVPTELILAADAIPVGLCGGKEV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEE
TIPSAEEDLPRNICPLIKSSYGFKKDKACPYIEASDIIIGETTCDGKKKMFEHMSEMVKL
ECCCCHHHCCHHHHHHHHHCCCCCCCCCCCCEECCCEEEECCCCCHHHHHHHHHHHHHHH
HVMQLPHFRDERSAKLWLEEVRDLKELIEEETGNKITEEKLKEAIDKVNKLRELFYKVYE
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRRNKISPIKGTDALKLFQMSYLLDINTITGIIENLINELEERVENNEGYSGKRILIAGC
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
PMVAGNTKIPEIVENIGGVVVGEESCTGTRQFENYVEGYSIEDLSSRYFKIPCACTYSNE
CEECCCCCCHHHHHHHCCEEECCCCCCCHHHHHHHHCCCCHHHHCCCEEECCEEEECCCH
DRIKRLKELVDEQKADGVIYYTLQNCHTFNIEGALVEKKLKEVGIPIVRIETDYSESDKE
HHHHHHHHHHHHHCCCCEEEEEECCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCCHHH
QIKTRLEAFLEMI
HHHHHHHHHHHHC
>Mature Secondary Structure
MDGLKSIDELNNAFSKRRDELYGQKNDGKKVFGLFCTFVPTELILAADAIPVGLCGGKEV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEE
TIPSAEEDLPRNICPLIKSSYGFKKDKACPYIEASDIIIGETTCDGKKKMFEHMSEMVKL
ECCCCHHHCCHHHHHHHHHCCCCCCCCCCCCEECCCEEEECCCCCHHHHHHHHHHHHHHH
HVMQLPHFRDERSAKLWLEEVRDLKELIEEETGNKITEEKLKEAIDKVNKLRELFYKVYE
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRRNKISPIKGTDALKLFQMSYLLDINTITGIIENLINELEERVENNEGYSGKRILIAGC
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
PMVAGNTKIPEIVENIGGVVVGEESCTGTRQFENYVEGYSIEDLSSRYFKIPCACTYSNE
CEECCCCCCHHHHHHHCCEEECCCCCCCHHHHHHHHCCCCHHHHCCCEEECCEEEECCCH
DRIKRLKELVDEQKADGVIYYTLQNCHTFNIEGALVEKKLKEVGIPIVRIETDYSESDKE
HHHHHHHHHHHHHCCCCEEEEEECCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCCHHH
QIKTRLEAFLEMI
HHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]