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The map label for this gene is hypD [C]

Identifier: 150400042

GI number: 150400042

Start: 1326397

End: 1327479

Strand: Reverse

Name: hypD [C]

Synonym: Mevan_1300

Alternate gene names: 150400042

Gene position: 1327479-1326397 (Counterclockwise)

Preceding gene: 150400045

Following gene: 150400036

Centisome position: 77.18

GC content: 35.46

Gene sequence:

>1083_bases
ATGGATAATGACATTATGAATATTAATGATAAGGAATTAATTAAAAAATCAATCCAAACAATCCAGAAACTCTCTGAAAA
GTTGGATGACGTAAAAATAATGCACGTTTGTGGTTCACATGAACATACAATTTGTAAATATGGAATTAGAGATGTTTTAC
CTGAAAATATTACTGTAGTACCAGGACCCGGATGCCCAGTATGTGTTACAACCCAAAAAGAAATTGATGAAGCAATGTAT
TTAGCAGAACAAGGATACACGATTGCAACTTTAGGTGATATGTATAGGGTTCCAGGAAGCAAAAAGTCGCTAATGGAGCT
TCAATCTGAAGGAGCGGATGTTAGAATTGTTTACGGAATTCCAGACGCAGTAAAATTGGCAAAAAAGCAGGATGAAAAGG
TAATTTTTGTTGCAATTGGTTTTGAAACTACTGCACCAACAACAGCTGCTGAACTCCTATCAAAACCTGAAAATTTCTAC
ATATTAAATTCACATAGGCAAACTCCGCCAGTAATGGGCTTTTTACTTAGTGGTGGAACGGAATTGAAGTTAAACGGTTT
TATATGTCCAGGTCACGTTTCAACAATTACTGGTTTAAAACCATATTATGGGCCATGTGAAACATATAAAGCTCCGATGG
TTGTTGCAGGGTTTGAACCAATTGATGTTATGGCCTCCCTTGTAATGATACTAAAACAGCTTGTAAAGGGCGAAGCTAAA
GTTGAAAATGAATATAAAAGAGCAGTGAAGGAAGAAGGAAACGTTATTGCACAAAAAATTATGAATAAGGTGTTTGAACC
TTCAGACGTTGCTTGGAGGGGGTTTCCGGTGATTAAAGATGGCGGAATGAAATTAAGAGAAGAATTTAAAAAGTACGATG
TTTCTGAAAATATCGATATTCCAGAAATTAAAGAGGTAATAAATAAGGCCTGTATATGCAGTGAAATATTAAGGGGGGAA
AAACTTCCAAATGACTGCAAACTTTTTGGAAAGACTTGTGACCCTTTAAATCCGGTTGGAAGTTGCATGGTTTCTGATGA
AGGAACTTGCAGGATATTTTATAAATACAGTAGATTTAGATAA

Upstream 100 bases:

>100_bases
TTTAAAACCGATATTTTACAAAGTCCACTCTAATATTTTTATATATTATTTTACCATTTAGTTCATTAGTGTAATTTTAG
TGTAATTTAAGAGGGAAAAA

Downstream 100 bases:

>100_bases
TTATTTTAACTTTTTAACGGATTTAAAAAAAATTTTTAAATTAAATCTCAAGTATGCTTGACTTAAGTTTATATGTGCTA
CTGCAATTACTTTTATCTTC

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MDNDIMNINDKELIKKSIQTIQKLSEKLDDVKIMHVCGSHEHTICKYGIRDVLPENITVVPGPGCPVCVTTQKEIDEAMY
LAEQGYTIATLGDMYRVPGSKKSLMELQSEGADVRIVYGIPDAVKLAKKQDEKVIFVAIGFETTAPTTAAELLSKPENFY
ILNSHRQTPPVMGFLLSGGTELKLNGFICPGHVSTITGLKPYYGPCETYKAPMVVAGFEPIDVMASLVMILKQLVKGEAK
VENEYKRAVKEEGNVIAQKIMNKVFEPSDVAWRGFPVIKDGGMKLREEFKKYDVSENIDIPEIKEVINKACICSEILRGE
KLPNDCKLFGKTCDPLNPVGSCMVSDEGTCRIFYKYSRFR

Sequences:

>Translated_360_residues
MDNDIMNINDKELIKKSIQTIQKLSEKLDDVKIMHVCGSHEHTICKYGIRDVLPENITVVPGPGCPVCVTTQKEIDEAMY
LAEQGYTIATLGDMYRVPGSKKSLMELQSEGADVRIVYGIPDAVKLAKKQDEKVIFVAIGFETTAPTTAAELLSKPENFY
ILNSHRQTPPVMGFLLSGGTELKLNGFICPGHVSTITGLKPYYGPCETYKAPMVVAGFEPIDVMASLVMILKQLVKGEAK
VENEYKRAVKEEGNVIAQKIMNKVFEPSDVAWRGFPVIKDGGMKLREEFKKYDVSENIDIPEIKEVINKACICSEILRGE
KLPNDCKLFGKTCDPLNPVGSCMVSDEGTCRIFYKYSRFR
>Mature_360_residues
MDNDIMNINDKELIKKSIQTIQKLSEKLDDVKIMHVCGSHEHTICKYGIRDVLPENITVVPGPGCPVCVTTQKEIDEAMY
LAEQGYTIATLGDMYRVPGSKKSLMELQSEGADVRIVYGIPDAVKLAKKQDEKVIFVAIGFETTAPTTAAELLSKPENFY
ILNSHRQTPPVMGFLLSGGTELKLNGFICPGHVSTITGLKPYYGPCETYKAPMVVAGFEPIDVMASLVMILKQLVKGEAK
VENEYKRAVKEEGNVIAQKIMNKVFEPSDVAWRGFPVIKDGGMKLREEFKKYDVSENIDIPEIKEVINKACICSEILRGE
KLPNDCKLFGKTCDPLNPVGSCMVSDEGTCRIFYKYSRFR

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=366, Percent_Identity=36.8852459016393, Blast_Score=255, Evalue=2e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40093; Mature: 40093

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNDIMNINDKELIKKSIQTIQKLSEKLDDVKIMHVCGSHEHTICKYGIRDVLPENITVV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHCCCCEEEE
PGPGCPVCVTTQKEIDEAMYLAEQGYTIATLGDMYRVPGSKKSLMELQSEGADVRIVYGI
CCCCCCEEEECHHHHHHHHHHHHCCCEEEECCHHHCCCCCHHHHHHHHHCCCCEEEEECC
PDAVKLAKKQDEKVIFVAIGFETTAPTTAAELLSKPENFYILNSHRQTPPVMGFLLSGGT
CHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCC
ELKLNGFICPGHVSTITGLKPYYGPCETYKAPMVVAGFEPIDVMASLVMILKQLVKGEAK
EEEEECEECCCCHHHHCCCCCCCCCHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCHHH
VENEYKRAVKEEGNVIAQKIMNKVFEPSDVAWRGFPVIKDGGMKLREEFKKYDVSENIDI
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCC
PEIKEVINKACICSEILRGEKLPNDCKLFGKTCDPLNPVGSCMVSDEGTCRIFYKYSRFR
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHCEEECCCCCEEEEEEECCCC
>Mature Secondary Structure
MDNDIMNINDKELIKKSIQTIQKLSEKLDDVKIMHVCGSHEHTICKYGIRDVLPENITVV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHCCCCEEEE
PGPGCPVCVTTQKEIDEAMYLAEQGYTIATLGDMYRVPGSKKSLMELQSEGADVRIVYGI
CCCCCCEEEECHHHHHHHHHHHHCCCEEEECCHHHCCCCCHHHHHHHHHCCCCEEEEECC
PDAVKLAKKQDEKVIFVAIGFETTAPTTAAELLSKPENFYILNSHRQTPPVMGFLLSGGT
CHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCC
ELKLNGFICPGHVSTITGLKPYYGPCETYKAPMVVAGFEPIDVMASLVMILKQLVKGEAK
EEEEECEECCCCHHHHCCCCCCCCCHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCHHH
VENEYKRAVKEEGNVIAQKIMNKVFEPSDVAWRGFPVIKDGGMKLREEFKKYDVSENIDI
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCC
PEIKEVINKACICSEILRGEKLPNDCKLFGKTCDPLNPVGSCMVSDEGTCRIFYKYSRFR
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHCEEECCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]