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The map label for this gene is rpoL

Identifier: 150400016

GI number: 150400016

Start: 1300791

End: 1301078

Strand: Reverse

Name: rpoL

Synonym: Mevan_1274

Alternate gene names: 150400016

Gene position: 1301078-1300791 (Counterclockwise)

Preceding gene: 150400017

Following gene: 150400015

Centisome position: 75.64

GC content: 29.17

Gene sequence:

>288_bases
ATGAGTTATATTAATATTATTGAAAAAAGCGAAAATTCTATAGAATTGGAACTTGTTAACGATGATCATTCATTAAGTAA
TGCATTAAAAGAATCATTGCTTTCAAAAAAAGGAGTTGTAATTGCATCTTATGGTGTAGAACATCCAGTTTTACACCCTG
AAACAGGAAGATATATCTCAAACCCAACATTAGTCCTAAAAACTGAAGGGGTACTTGCAGAAAAAGTTTTAAAAGAAGCT
TTAAGGGACATAATTGACCTTTGTAGTAATTGTTTAGAAGAATTATAA

Upstream 100 bases:

>100_bases
AAAAAGGCCTAGAAAAAGAATTATTTCGGGAAGAAAACGAAAAAATCGTCCTGAATAAGGATATAGATTTAACAAGAAAA
GAACTTTTGAGTGTGAAAAA

Downstream 100 bases:

>100_bases
CCTTTATACCCAACTACGATTCTTATAAAAAAATATCATTTATAAACTCTTTTTTAAGTATATTTAAACCTCAGTAACTT
ATTTATAATATGTAACAATA

Product: RNA polymerase dimerisation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MSYINIIEKSENSIELELVNDDHSLSNALKESLLSKKGVVIASYGVEHPVLHPETGRYISNPTLVLKTEGVLAEKVLKEA
LRDIIDLCSNCLEEL

Sequences:

>Translated_95_residues
MSYINIIEKSENSIELELVNDDHSLSNALKESLLSKKGVVIASYGVEHPVLHPETGRYISNPTLVLKTEGVLAEKVLKEA
LRDIIDLCSNCLEEL
>Mature_94_residues
SYINIIEKSENSIELELVNDDHSLSNALKESLLSKKGVVIASYGVEHPVLHPETGRYISNPTLVLKTEGVLAEKVLKEAL
RDIIDLCSNCLEEL

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG1761

COG function: function code K; DNA-directed RNA polymerase, subunit L

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOL_METVS (A6URP9)

Other databases:

- EMBL:   CP000742
- RefSeq:   YP_001323783.1
- ProteinModelPortal:   A6URP9
- SMR:   A6URP9
- STRING:   A6URP9
- GeneID:   5324662
- GenomeReviews:   CP000742_GR
- KEGG:   mvn:Mevan_1274
- eggNOG:   arNOG13050
- HOGENOM:   HBG726964
- OMA:   ASYGVEH
- ProtClustDB:   PRK01146
- HAMAP:   MF_00261
- InterPro:   IPR009025
- InterPro:   IPR008193
- InterPro:   IPR022905

Pfam domain/function: SSF55257 RNAP_RBP11-like

EC number: =2.7.7.6

Molecular weight: Translated: 10534; Mature: 10403

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS01154 RNA_POL_L_13KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYINIIEKSENSIELELVNDDHSLSNALKESLLSKKGVVIASYGVEHPVLHPETGRYIS
CCCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEC
NPTLVLKTEGVLAEKVLKEALRDIIDLCSNCLEEL
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SYINIIEKSENSIELELVNDDHSLSNALKESLLSKKGVVIASYGVEHPVLHPETGRYIS
CCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEC
NPTLVLKTEGVLAEKVLKEALRDIIDLCSNCLEEL
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA