Click here to switch to the map view.

The map label for this gene is priA [H]

Identifier: 150399829

GI number: 150399829

Start: 1097435

End: 1098502

Strand: Reverse

Name: priA [H]

Synonym: Mevan_1084

Alternate gene names: 150399829

Gene position: 1098502-1097435 (Counterclockwise)

Preceding gene: 150399833

Following gene: 150399822

Centisome position: 63.86

GC content: 30.43

Gene sequence:

>1068_bases
ATGGACGATAATTCTAAAAATTGCATCTTTAATGAAGTATCTACGCTATATCATGAATACTACGACTATGCAATTAAAAA
AAGAAAGTGGCTTGAAGTTCCAAAAGACCTTGAACATAGGGAAATTGGTTACGGGATGTTAAAAAAAGTGGATAATAGAA
ATATTTCATTTACAAATGAAATCGATTACCTATCTTGGGTATTAAAAGAAGCACCTTTTCACCTTTATAAATCACTTTCA
TATATGGAACATCCGAGTTTAATTGGTGGAGCCACTAAAAAAGGCATTTTTAAAAGAGAAATTGCTTTTGATATTGATAC
ACATAAAACCAAGTACTGTAGTCACGACGATAGCTGGATATGTGAAGAGTGCCTAAATGAGGCAAAAAATCAGGTTTTAA
TATTAAGTGAGGACTTTTTATTTCCAGATTTTGGCCTAACTAAAAACGATTTAAAAATAGTATTTACGGGAAATAGGGGA
TACCATGTTTATTTAGAACCTGAAGACGAAAGTATAAAAAATAGAATTGAATCTTGGGGAAAAGACGAAAGAAGGTATTT
TATCGAATATATTTTAGGAAAAAATATGAATTTGAGAATAATGGGGAATCGTTGGAAAATAAGGTTACTTAAAGAATTTG
AAAAAAATAAAATAGGCATTAAAAAATTTGAAAAAACAGCGGACTGGAAAACCGAAATCGATACTCGAAAAGACGATATA
AGAAAAAAAATTTACGAAATAATACATAATATGAAAAGTCGTCTAGAACTGGATGAAAAAGTTATGGATGATGATATACG
GCTTCTTAGAACCATTGGTTCACTTCACGGATATACTGGACTTATGGTCAAGGAAATTGCATATGATTCACTAAAAAACG
GACAGTTTGACCCTTTAAATCATGCCGTTTTTTCAAAATTCCATAAAAAAAGATACTCTGTAAAAATAAATCAGGAAGTG
TTCCAATTAACCTTAAAAGGGGAAATATTCGATCATGAAAGTAAAGAAATTCCTGCAAGCTATCTTTTATTCTTGTTTGG
GCATGGTATTGATTTTGAAATTCTTTAA

Upstream 100 bases:

>100_bases
TAATGAAATTTCGTTTAAATTATTAGAAGATAAATTTAATTAATAATTCATATAATATTATTTAAATCTGATTTGATTAA
CCATATAATAAGTGAAAAAT

Downstream 100 bases:

>100_bases
AAATCTTTTTTATTTTTTTATAGCTTACTTAAGGATTTGAGTATAAAATAGATTTAAATTAATATATTTAGATTAATAAA
TTAATTTATCCAAAATTAAA

Product: putative DNA primase, small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MDDNSKNCIFNEVSTLYHEYYDYAIKKRKWLEVPKDLEHREIGYGMLKKVDNRNISFTNEIDYLSWVLKEAPFHLYKSLS
YMEHPSLIGGATKKGIFKREIAFDIDTHKTKYCSHDDSWICEECLNEAKNQVLILSEDFLFPDFGLTKNDLKIVFTGNRG
YHVYLEPEDESIKNRIESWGKDERRYFIEYILGKNMNLRIMGNRWKIRLLKEFEKNKIGIKKFEKTADWKTEIDTRKDDI
RKKIYEIIHNMKSRLELDEKVMDDDIRLLRTIGSLHGYTGLMVKEIAYDSLKNGQFDPLNHAVFSKFHKKRYSVKINQEV
FQLTLKGEIFDHESKEIPASYLLFLFGHGIDFEIL

Sequences:

>Translated_355_residues
MDDNSKNCIFNEVSTLYHEYYDYAIKKRKWLEVPKDLEHREIGYGMLKKVDNRNISFTNEIDYLSWVLKEAPFHLYKSLS
YMEHPSLIGGATKKGIFKREIAFDIDTHKTKYCSHDDSWICEECLNEAKNQVLILSEDFLFPDFGLTKNDLKIVFTGNRG
YHVYLEPEDESIKNRIESWGKDERRYFIEYILGKNMNLRIMGNRWKIRLLKEFEKNKIGIKKFEKTADWKTEIDTRKDDI
RKKIYEIIHNMKSRLELDEKVMDDDIRLLRTIGSLHGYTGLMVKEIAYDSLKNGQFDPLNHAVFSKFHKKRYSVKINQEV
FQLTLKGEIFDHESKEIPASYLLFLFGHGIDFEIL
>Mature_355_residues
MDDNSKNCIFNEVSTLYHEYYDYAIKKRKWLEVPKDLEHREIGYGMLKKVDNRNISFTNEIDYLSWVLKEAPFHLYKSLS
YMEHPSLIGGATKKGIFKREIAFDIDTHKTKYCSHDDSWICEECLNEAKNQVLILSEDFLFPDFGLTKNDLKIVFTGNRG
YHVYLEPEDESIKNRIESWGKDERRYFIEYILGKNMNLRIMGNRWKIRLLKEFEKNKIGIKKFEKTADWKTEIDTRKDDI
RKKIYEIIHNMKSRLELDEKVMDDDIRLLRTIGSLHGYTGLMVKEIAYDSLKNGQFDPLNHAVFSKFHKKRYSVKINQEV
FQLTLKGEIFDHESKEIPASYLLFLFGHGIDFEIL

Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]

COG id: COG1467

COG function: function code L; Eukaryotic-type DNA primase, catalytic (small) subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic-type primase small subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002755
- InterPro:   IPR014052 [H]

Pfam domain/function: PF01896 DNA_primase_S [H]

EC number: 2.7.7.-

Molecular weight: Translated: 42235; Mature: 42235

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDNSKNCIFNEVSTLYHEYYDYAIKKRKWLEVPKDLEHREIGYGMLKKVDNRNISFTNE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHCCCCCCCCCH
IDYLSWVLKEAPFHLYKSLSYMEHPSLIGGATKKGIFKREIAFDIDTHKTKYCSHDDSWI
HHHHHHHHHHCHHHHHHHHHHHCCCCHHCCCHHCCCCHHHHEEECCCCCCCCCCCCCCHH
CEECLNEAKNQVLILSEDFLFPDFGLTKNDLKIVFTGNRGYHVYLEPEDESIKNRIESWG
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHCC
KDERRYFIEYILGKNMNLRIMGNRWKIRLLKEFEKNKIGIKKFEKTADWKTEIDTRKDDI
CHHHHHHHHHHHCCCCEEEEECCCEEEHHHHHHHHCCCCHHHHHHCCCCHHHCCCCHHHH
RKKIYEIIHNMKSRLELDEKVMDDDIRLLRTIGSLHGYTGLMVKEIAYDSLKNGQFDPLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHH
HAVFSKFHKKRYSVKINQEVFQLTLKGEIFDHESKEIPASYLLFLFGHGIDFEIL
HHHHHHHHHHHCEEEECHHHEEEEECCCEECCCCCCCCHHHHHHHHCCCCCEEEC
>Mature Secondary Structure
MDDNSKNCIFNEVSTLYHEYYDYAIKKRKWLEVPKDLEHREIGYGMLKKVDNRNISFTNE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHCCCCCCCCCH
IDYLSWVLKEAPFHLYKSLSYMEHPSLIGGATKKGIFKREIAFDIDTHKTKYCSHDDSWI
HHHHHHHHHHCHHHHHHHHHHHCCCCHHCCCHHCCCCHHHHEEECCCCCCCCCCCCCCHH
CEECLNEAKNQVLILSEDFLFPDFGLTKNDLKIVFTGNRGYHVYLEPEDESIKNRIESWG
HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHCC
KDERRYFIEYILGKNMNLRIMGNRWKIRLLKEFEKNKIGIKKFEKTADWKTEIDTRKDDI
CHHHHHHHHHHHCCCCEEEEECCCEEEHHHHHHHHCCCCHHHHHHCCCCHHHCCCCHHHH
RKKIYEIIHNMKSRLELDEKVMDDDIRLLRTIGSLHGYTGLMVKEIAYDSLKNGQFDPLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHH
HAVFSKFHKKRYSVKINQEVFQLTLKGEIFDHESKEIPASYLLFLFGHGIDFEIL
HHHHHHHHHHHCEEEECHHHEEEEECCCEECCCCCCCCHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA