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The map label for this gene is 150399797

Identifier: 150399797

GI number: 150399797

Start: 1070936

End: 1071205

Strand: Reverse

Name: 150399797

Synonym: Mevan_1051

Alternate gene names: NA

Gene position: 1071205-1070936 (Counterclockwise)

Preceding gene: 150399798

Following gene: 150399796

Centisome position: 62.28

GC content: 31.11

Gene sequence:

>270_bases
TTGGAAAAAATACAAATATTACACAAAACTCCGAAAGGAAAATTAATTGGGCGTACTAAAAAACAGTTGCGGTTAAATGC
ATCTGTCGGTTTAAAAATTAAAGATAAAATTAAGAAAATTGGAAAGATATATGATATATTTGGGCCTGTTGATGAACCTT
ATGTAAAAATAATCCCATTTAATGAAGAAGACGCTATGGAATCAGTTAAAGTCAGTCACGTTTTCGTTTTAGAAGAGCAG
CAGAAGACCCGTAAAAAAGGAAGGAAATAA

Upstream 100 bases:

>100_bases
TTCGAAACTTATATATATAATCGTGTGGAGAGTATATATGAATCGATATCATTGTTTATATTTATAATTTTAAATAGAGT
AATCTGTCGGGGGAAATCCT

Downstream 100 bases:

>100_bases
CTTTAACGCGGTGTTATCATGAAAGTTGAACCCATTACAAAAGAAGATACAAAAAAGTCCGAAAGAAAAATAAAGCTAGC
TGTAGCAAAGCCTGAGGACT

Product: H/ACA RNA-protein complex component Gar1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MEKIQILHKTPKGKLIGRTKKQLRLNASVGLKIKDKIKKIGKIYDIFGPVDEPYVKIIPFNEEDAMESVKVSHVFVLEEQ
QKTRKKGRK

Sequences:

>Translated_89_residues
MEKIQILHKTPKGKLIGRTKKQLRLNASVGLKIKDKIKKIGKIYDIFGPVDEPYVKIIPFNEEDAMESVKVSHVFVLEEQ
QKTRKKGRK
>Mature_89_residues
MEKIQILHKTPKGKLIGRTKKQLRLNASVGLKIKDKIKKIGKIYDIFGPVDEPYVKIIPFNEEDAMESVKVSHVFVLEEQ
QKTRKKGRK

Specific function: Unknown

COG id: COG3277

COG function: function code J; RNA-binding protein involved in rRNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.thermoautotrophicum MTH886 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007504
- InterPro:   IPR020321
- InterPro:   IPR009000
- ProDom:   PD064583 [H]

Pfam domain/function: PF04410 Gar1 [H]

EC number: NA

Molecular weight: Translated: 10301; Mature: 10301

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIQILHKTPKGKLIGRTKKQLRLNASVGLKIKDKIKKIGKIYDIFGPVDEPYVKIIPF
CCCEEEEEECCCCCCCCCCCHHEEECCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEEEC
NEEDAMESVKVSHVFVLEEQQKTRKKGRK
CCHHHHHHEEEEEEEEECCHHHHHHCCCC
>Mature Secondary Structure
MEKIQILHKTPKGKLIGRTKKQLRLNASVGLKIKDKIKKIGKIYDIFGPVDEPYVKIIPF
CCCEEEEEECCCCCCCCCCCHHEEECCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEEEC
NEEDAMESVKVSHVFVLEEQQKTRKKGRK
CCHHHHHHEEEEEEEEECCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]