Definition Methanococcus vannielii SB chromosome, complete genome.
Accession NC_009634
Length 1,720,048

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The map label for this gene is porD [H]

Identifier: 150399566

GI number: 150399566

Start: 846128

End: 846385

Strand: Reverse

Name: porD [H]

Synonym: Mevan_0815

Alternate gene names: 150399566

Gene position: 846385-846128 (Counterclockwise)

Preceding gene: 150399567

Following gene: 150399565

Centisome position: 49.21

GC content: 34.88

Gene sequence:

>258_bases
ATGGTAAACACTGGAACTATTATTTATGAACCGGGAAGTTCGGCAAACAATAAAACCGGGAGCTGGAGAGTATTTAAACC
CATTTTGGACAAAGAAAAATGTGTAATGTGTGAAAATTGCTATATTTTCTGTCCAGAAGGCTGTATCCAGGAGAAAAATG
GAAAATTTGAAATCGATTATGACTACTGTAAGGGATGTCTTATCTGTGAAAGAGAATGTCCTGTAAAAGCAATAAAAGCT
GAAAGGGAAGAAAAATAA

Upstream 100 bases:

>100_bases
TGAAACATTTCCTGGAAAATTGGGCCCTAAAAATGCAGAAGCTGCTGAAAAAGCATACAATATTGTAAAAGGTTTGTAAT
GTGTCTTTTAAGGTGATTTT

Downstream 100 bases:

>100_bases
CTATTTAAGGAGGATATCATGTGTGAAATTAAGGTTATTACGGGAACTTCGGCAGCTGCAGAAGCTGCAAAGCTTGCAGA
CGTAGATGTTATTGCAGCAT

Product: pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta

Products: acetyl-CoA; CO2; reduced ferredoxin

Alternate protein names: Pyruvate oxidoreductase delta chain; POR; Pyruvic-ferredoxin oxidoreductase subunit delta [H]

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MVNTGTIIYEPGSSANNKTGSWRVFKPILDKEKCVMCENCYIFCPEGCIQEKNGKFEIDYDYCKGCLICERECPVKAIKA
EREEK

Sequences:

>Translated_85_residues
MVNTGTIIYEPGSSANNKTGSWRVFKPILDKEKCVMCENCYIFCPEGCIQEKNGKFEIDYDYCKGCLICERECPVKAIKA
EREEK
>Mature_85_residues
MVNTGTIIYEPGSSANNKTGSWRVFKPILDKEKCVMCENCYIFCPEGCIQEKNGKFEIDYDYCKGCLICERECPVKAIKA
EREEK

Specific function: Unknown

COG id: COG1144

COG function: function code C; Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR011898 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: 1.2.7.1

Molecular weight: Translated: 9740; Mature: 9740

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

10.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
12.9 %Cys+Met (Translated Protein)
10.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
12.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNTGTIIYEPGSSANNKTGSWRVFKPILDKEKCVMCENCYIFCPEGCIQEKNGKFEIDY
CCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCEEECCCCCCCCCCCCEEEEH
DYCKGCLICERECPVKAIKAEREEK
HHCCCEEEECCCCCHHHCCCCCCCC
>Mature Secondary Structure
MVNTGTIIYEPGSSANNKTGSWRVFKPILDKEKCVMCENCYIFCPEGCIQEKNGKFEIDY
CCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCEEECCCCCCCCCCCCEEEEH
DYCKGCLICERECPVKAIKAEREEK
HHCCCEEEECCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: pyruvate; CoA; oxidized ferredoxin

Specific reaction: pyruvate + CoA + oxidized ferredoxin = acetyl-CoA + CO2 + reduced ferredoxin

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]