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The map label for this gene is ychF [C]

Identifier: 150399197

GI number: 150399197

Start: 497394

End: 498572

Strand: Reverse

Name: ychF [C]

Synonym: Mevan_0445

Alternate gene names: 150399197

Gene position: 498572-497394 (Counterclockwise)

Preceding gene: 150399198

Following gene: 150399195

Centisome position: 28.99

GC content: 33.16

Gene sequence:

>1179_bases
ATGGCAATACTCGGACTTGTTGGAAAACCAAATGTTGGAAAATCTACAACATTTAATGCAATGACGGAAAAAGTTGCAGA
TGTTGGAAATTACCCGTTTACAACAATAAATCCAAATATCGGAACTTCTTTTGTTACAAAACCATGTCCTTGCAGTACTT
TAAATTTAAAATGCAGCCCAAACAATTCAAAATGTTTTTCCGGTGTCCGTAATATCCCTGTTGAAATTATTGACGTTGCA
GGACTTGTTCCAGATGCCCACAAGGGTAAAGGGATGGGTAATAAATTTTTAGATGATTTAAGGCAGGCAGATGCTTTTAT
ACTTGTAGTTGATGCAAGTGGCAAAACTGATTTAGAAGGAAATATTACTGAAGACCACGACCCTATCATGGACGTTAAAT
TCCTTTTAAATGAGCTTGATATGTGGATATACGGGATTTTAACTAAAAACTGGGAAAGGCTTTCAAGGAGAGCGCAACAG
GAAAAAAACGTTTTAAAAAGTATACACGAACAATTAAGTGGTTTAAATATTTCTGAAAATCAGGTTGCAGCAGCTTTAAG
GAACTTAGATGAAAGCCCAATGAAATGGACTGAAAGTGATATTTTAACTCTTTCAACAAATTTAAGGAAGGCATCAAAAC
CAATGATTATAGCTGCAAACAAGGCTGATCATGAAAATGCAGAAAAAAATATTGAAAAATTAAAGGAAGAATTTAAGGAG
TTTTCAGTAATTCCTACGTCTTCGGAAATAGAACTTGCACTAAAAAAAGCAGAAAAAGCAGGTTTAATCAATTACAATGG
TAAAAAAATGGAAATAATTGATGAAACCCGCTTAAACGATGCTCAAAAGAACGCATTAAACTATATGAAAAATTATCTTG
AAAAATTTGGCGGAACAGGAATTCAAAATTTAATTAACAATGCTTATTTTGACCTATTAAACATGATTGTAGTATATCCC
GTTGAAGACGAGGGTAAATTCTCAGATAAAAAAGGAAATGTTTTACCGGATGCGTATTTGCTTAAAAAAGGTTCAACAGC
AAGAGAACTTGCGTTTAAAATCCATACTGAAATAGGGCAAAAATTTATATATGCAGTTGATGCAAGAAAAAAACTTAGAA
TTGGTGCCGATCAGGAATTGAATGACGGAGATATTATAAAAATAGTTTCTGCAGCATAA

Upstream 100 bases:

>100_bases
AATTTAAGAGAATTATGGACTAACATATAGTTCACTTTTTATTTGACAGATAATTTTTATTTAACGAATAATTAGGAAAT
AATAATTTAAAGGTGATATA

Downstream 100 bases:

>100_bases
ATTTCTTTTAATTTTTGAATTTGGTAAGTTACTTAAAATTAAAAATTTTTAACAGCATCATACTTTTAAAAATTTTAAAA
GTTTTTTATTTTAAAACTTT

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MAILGLVGKPNVGKSTTFNAMTEKVADVGNYPFTTINPNIGTSFVTKPCPCSTLNLKCSPNNSKCFSGVRNIPVEIIDVA
GLVPDAHKGKGMGNKFLDDLRQADAFILVVDASGKTDLEGNITEDHDPIMDVKFLLNELDMWIYGILTKNWERLSRRAQQ
EKNVLKSIHEQLSGLNISENQVAAALRNLDESPMKWTESDILTLSTNLRKASKPMIIAANKADHENAEKNIEKLKEEFKE
FSVIPTSSEIELALKKAEKAGLINYNGKKMEIIDETRLNDAQKNALNYMKNYLEKFGGTGIQNLINNAYFDLLNMIVVYP
VEDEGKFSDKKGNVLPDAYLLKKGSTARELAFKIHTEIGQKFIYAVDARKKLRIGADQELNDGDIIKIVSAA

Sequences:

>Translated_392_residues
MAILGLVGKPNVGKSTTFNAMTEKVADVGNYPFTTINPNIGTSFVTKPCPCSTLNLKCSPNNSKCFSGVRNIPVEIIDVA
GLVPDAHKGKGMGNKFLDDLRQADAFILVVDASGKTDLEGNITEDHDPIMDVKFLLNELDMWIYGILTKNWERLSRRAQQ
EKNVLKSIHEQLSGLNISENQVAAALRNLDESPMKWTESDILTLSTNLRKASKPMIIAANKADHENAEKNIEKLKEEFKE
FSVIPTSSEIELALKKAEKAGLINYNGKKMEIIDETRLNDAQKNALNYMKNYLEKFGGTGIQNLINNAYFDLLNMIVVYP
VEDEGKFSDKKGNVLPDAYLLKKGSTARELAFKIHTEIGQKFIYAVDARKKLRIGADQELNDGDIIKIVSAA
>Mature_391_residues
AILGLVGKPNVGKSTTFNAMTEKVADVGNYPFTTINPNIGTSFVTKPCPCSTLNLKCSPNNSKCFSGVRNIPVEIIDVAG
LVPDAHKGKGMGNKFLDDLRQADAFILVVDASGKTDLEGNITEDHDPIMDVKFLLNELDMWIYGILTKNWERLSRRAQQE
KNVLKSIHEQLSGLNISENQVAAALRNLDESPMKWTESDILTLSTNLRKASKPMIIAANKADHENAEKNIEKLKEEFKEF
SVIPTSSEIELALKKAEKAGLINYNGKKMEIIDETRLNDAQKNALNYMKNYLEKFGGTGIQNLINNAYFDLLNMIVVYPV
EDEGKFSDKKGNVLPDAYLLKKGSTARELAFKIHTEIGQKFIYAVDARKKLRIGADQELNDGDIIKIVSAA

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=378, Percent_Identity=26.984126984127, Blast_Score=96, Evalue=5e-20,
Organism=Escherichia coli, GI1787454, Length=376, Percent_Identity=27.1276595744681, Blast_Score=86, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17509631, Length=378, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6321649, Length=396, Percent_Identity=35.3535353535354, Blast_Score=239, Evalue=5e-64,
Organism=Saccharomyces cerevisiae, GI6321773, Length=385, Percent_Identity=26.2337662337662, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319499, Length=263, Percent_Identity=26.2357414448669, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24640873, Length=368, Percent_Identity=27.1739130434783, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24640877, Length=368, Percent_Identity=27.1739130434783, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24640875, Length=368, Percent_Identity=27.1739130434783, Blast_Score=88, Evalue=9e-18,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 43514; Mature: 43383

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILGLVGKPNVGKSTTFNAMTEKVADVGNYPFTTINPNIGTSFVTKPCPCSTLNLKCSP
CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEEEECC
NNSKCFSGVRNIPVEIIDVAGLVPDAHKGKGMGNKFLDDLRQADAFILVVDASGKTDLEG
CCHHHHHHHHCCCEEEEEHHCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCC
NITEDHDPIMDVKFLLNELDMWIYGILTKNWERLSRRAQQEKNVLKSIHEQLSGLNISEN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
QVAAALRNLDESPMKWTESDILTLSTNLRKASKPMIIAANKADHENAEKNIEKLKEEFKE
HHHHHHHCCCCCCCCCCCCCEEEEECCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
FSVIPTSSEIELALKKAEKAGLINYNGKKMEIIDETRLNDAQKNALNYMKNYLEKFGGTG
CCCCCCCCHHHHHHHHHHHCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHHHHHHCCCC
IQNLINNAYFDLLNMIVVYPVEDEGKFSDKKGNVLPDAYLLKKGSTARELAFKIHTEIGQ
HHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH
KFIYAVDARKKLRIGADQELNDGDIIKIVSAA
HEEEEECCCHHEECCCCCCCCCCCEEEEEECC
>Mature Secondary Structure 
AILGLVGKPNVGKSTTFNAMTEKVADVGNYPFTTINPNIGTSFVTKPCPCSTLNLKCSP
EEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEEEECC
NNSKCFSGVRNIPVEIIDVAGLVPDAHKGKGMGNKFLDDLRQADAFILVVDASGKTDLEG
CCHHHHHHHHCCCEEEEEHHCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCC
NITEDHDPIMDVKFLLNELDMWIYGILTKNWERLSRRAQQEKNVLKSIHEQLSGLNISEN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
QVAAALRNLDESPMKWTESDILTLSTNLRKASKPMIIAANKADHENAEKNIEKLKEEFKE
HHHHHHHCCCCCCCCCCCCCEEEEECCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
FSVIPTSSEIELALKKAEKAGLINYNGKKMEIIDETRLNDAQKNALNYMKNYLEKFGGTG
CCCCCCCCHHHHHHHHHHHCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHHHHHHCCCC
IQNLINNAYFDLLNMIVVYPVEDEGKFSDKKGNVLPDAYLLKKGSTARELAFKIHTEIGQ
HHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH
KFIYAVDARKKLRIGADQELNDGDIIKIVSAA
HEEEEECCCHHEECCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]