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The map label for this gene is xerD [C]

Identifier: 150399016

GI number: 150399016

Start: 304037

End: 305017

Strand: Reverse

Name: xerD [C]

Synonym: Mevan_0262

Alternate gene names: 150399016

Gene position: 305017-304037 (Counterclockwise)

Preceding gene: 150399020

Following gene: 150399014

Centisome position: 17.73

GC content: 39.96

Gene sequence:

>981_bases
ATGGACGATATAGCTAACATGATACTAATTAAGAAAGATTCCGGAAAACATCAACAAGCCGATGTCAAAAAACTTGAAAT
TGACAATCTCGTTGAAGAATTCAGCGCACAGCGTAGGTTTGACGGAATAAAAGATGCAACAATTGATAACGATAACGATC
GAATCAAAGTATTTTTACGATACAGTTACTACACGCTGAATAAAACTCCAGATACCCTAACGGACAAGGATTACTTTGCT
TTTTTCACATATCTAAAACGGGAGCGAAACTGTAGCGATAACACAGTCAACAAATACTTCAAACTGCTAAAGGTGTTCTA
CCGGCTGATGAAGTACAGCAACTTCAACGATTTTGTAACCGAAAGTAAGGAACGTAAACGGTTTTCGCGGTTTGATATCA
AGCACTACGATGCAATTGACGAAGATACGCTAAACACGATTTTGAAAAAGCTTCTCGAAGCAAACGGTGACACAAAAATA
CGGGATGCTACATTTATGCGGCTCTTGTGGGACACCGGTTGTCGGGTATCTGAAGTCTGTAACCTAACGTATTCCGCGTC
AGACCTAAACAAAGGGGTGTTTAAGCTTACCAACACGAAAACTAAGCAGGATCGGACAGTTGTGTGTTCAAAAGAAACGT
TGAAGCTTTTGAACTACTTCCTGCAGCATGATTCGAAGAACGCACCTGAAGACTACCTGTTCAAATCTGGACGTGGTGCT
AAGATGAATAAATACACGTTATCTGCACGGTTTAGGGATATCGTGGTTGAATTAAAGAAAAATGGAACAATTCCAAAGAA
TCGGTGGCTAGTTATACATTCACTACGTCACGGTCGAGCAGTTGATCTACTCGGAAAAGGTGTTCCGATCGATGTTGTGA
AGGAATATCTTGGTCATACTTCCATCGAAACTACTCTTATTTATTCACACTCAACAGACCGAAAAAACAAAATGCTCGAC
CAGATTTCAAAGATTTTGTAG

Upstream 100 bases:

>100_bases
ACGATTTTTTCAGGTGACAACATGACAATCAACAACCCAAAGGAAACTTACCGCATATGAAGGTCAAGTTTTCCGAATAA
AACACCAGTTAGGTGAAACT

Downstream 100 bases:

>100_bases
CGAAGTCCCGTGGTATCGTACCGCACCGGCCGAAAGTGGTCCGGCGCTCCGTAACCGCATCCTTTACCAAGAAAGATGCG
ATTGGGTTTTCATTCGCACC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MDDIANMILIKKDSGKHQQADVKKLEIDNLVEEFSAQRRFDGIKDATIDNDNDRIKVFLRYSYYTLNKTPDTLTDKDYFA
FFTYLKRERNCSDNTVNKYFKLLKVFYRLMKYSNFNDFVTESKERKRFSRFDIKHYDAIDEDTLNTILKKLLEANGDTKI
RDATFMRLLWDTGCRVSEVCNLTYSASDLNKGVFKLTNTKTKQDRTVVCSKETLKLLNYFLQHDSKNAPEDYLFKSGRGA
KMNKYTLSARFRDIVVELKKNGTIPKNRWLVIHSLRHGRAVDLLGKGVPIDVVKEYLGHTSIETTLIYSHSTDRKNKMLD
QISKIL

Sequences:

>Translated_326_residues
MDDIANMILIKKDSGKHQQADVKKLEIDNLVEEFSAQRRFDGIKDATIDNDNDRIKVFLRYSYYTLNKTPDTLTDKDYFA
FFTYLKRERNCSDNTVNKYFKLLKVFYRLMKYSNFNDFVTESKERKRFSRFDIKHYDAIDEDTLNTILKKLLEANGDTKI
RDATFMRLLWDTGCRVSEVCNLTYSASDLNKGVFKLTNTKTKQDRTVVCSKETLKLLNYFLQHDSKNAPEDYLFKSGRGA
KMNKYTLSARFRDIVVELKKNGTIPKNRWLVIHSLRHGRAVDLLGKGVPIDVVKEYLGHTSIETTLIYSHSTDRKNKMLD
QISKIL
>Mature_326_residues
MDDIANMILIKKDSGKHQQADVKKLEIDNLVEEFSAQRRFDGIKDATIDNDNDRIKVFLRYSYYTLNKTPDTLTDKDYFA
FFTYLKRERNCSDNTVNKYFKLLKVFYRLMKYSNFNDFVTESKERKRFSRFDIKHYDAIDEDTLNTILKKLLEANGDTKI
RDATFMRLLWDTGCRVSEVCNLTYSASDLNKGVFKLTNTKTKQDRTVVCSKETLKLLNYFLQHDSKNAPEDYLFKSGRGA
KMNKYTLSARFRDIVVELKKNGTIPKNRWLVIHSLRHGRAVDLLGKGVPIDVVKEYLGHTSIETTLIYSHSTDRKNKMLD
QISKIL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=190, Percent_Identity=30, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790244, Length=229, Percent_Identity=23.1441048034935, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38152; Mature: 38152

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDIANMILIKKDSGKHQQADVKKLEIDNLVEEFSAQRRFDGIKDATIDNDNDRIKVFLR
CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
YSYYTLNKTPDTLTDKDYFAFFTYLKRERNCSDNTVNKYFKLLKVFYRLMKYSNFNDFVT
EEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
ESKERKRFSRFDIKHYDAIDEDTLNTILKKLLEANGDTKIRDATFMRLLWDTGCRVSEVC
CCHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH
NLTYSASDLNKGVFKLTNTKTKQDRTVVCSKETLKLLNYFLQHDSKNAPEDYLFKSGRGA
CCEECHHHHCCCCEEECCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCHHHHHCCCCCC
KMNKYTLSARFRDIVVELKKNGTIPKNRWLVIHSLRHGRAVDLLGKGVPIDVVKEYLGHT
CCCCEEHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEHHHCCCCCHHHHHHHHCCC
SIETTLIYSHSTDRKNKMLDQISKIL
CEEEEEEEECCCCHHHHHHHHHHHHC
>Mature Secondary Structure
MDDIANMILIKKDSGKHQQADVKKLEIDNLVEEFSAQRRFDGIKDATIDNDNDRIKVFLR
CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
YSYYTLNKTPDTLTDKDYFAFFTYLKRERNCSDNTVNKYFKLLKVFYRLMKYSNFNDFVT
EEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
ESKERKRFSRFDIKHYDAIDEDTLNTILKKLLEANGDTKIRDATFMRLLWDTGCRVSEVC
CCHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH
NLTYSASDLNKGVFKLTNTKTKQDRTVVCSKETLKLLNYFLQHDSKNAPEDYLFKSGRGA
CCEECHHHHCCCCEEECCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCHHHHHCCCCCC
KMNKYTLSARFRDIVVELKKNGTIPKNRWLVIHSLRHGRAVDLLGKGVPIDVVKEYLGHT
CCCCEEHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEHHHCCCCCHHHHHHHHCCC
SIETTLIYSHSTDRKNKMLDQISKIL
CEEEEEEEECCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]