Click here to switch to the map view.

The map label for this gene is ybbB [C]

Identifier: 150398781

GI number: 150398781

Start: 18341

End: 19012

Strand: Reverse

Name: ybbB [C]

Synonym: Mevan_0021

Alternate gene names: 150398781

Gene position: 19012-18341 (Counterclockwise)

Preceding gene: 150398782

Following gene: 150398773

Centisome position: 1.11

GC content: 29.32

Gene sequence:

>672_bases
ATGGATGAAGAGACACTATCACGGTTGCTTACATTTAAAAATGATGTTGTTTTGGCAATAAGGCTTAGTACTGGACAAAA
AATGATACTTGGAAATAATATTGTGCTTTCAGGAAAATTAAGCGGAAAAATTGCATCATTTATATTGGAAAACTCTAAGA
AGATTGAAAAACCTGAAGTTATTGATTTTAATGGTGAAATGATATATTTTGAACCAATAAATATCAAAAAATACCTTGAT
TCGATAGGTAAAGAGCTTTCTGATGAATTAATAACGCTAAAAAATTTTGAAACGATGAATATCGATGAAATTCAAGTAGT
CGATGCAAGGTCGCCAAAAGAGTATTTTGAAAAGACAGTACCTGGTGCAGTGAATATTCCACTTTTTTTAACTGAAGAAC
ATGAAAAAATAGGTAAAACCTATAAAAATGAAGGGAAAGAAATTGCAATGAATATGGCGGCCCAAATAATTCAGGAAGGG
ATAAAAAGAATAGTTTTTGAATCTTTAAAATTAGATAGCAATAAAGAAATAATTGTATTTTGTGCAAGGGGTGGAATGAG
AAGCCAATCTGTTTCAACAATATTAAAACTTCTAGGATTTAAAGTAAAGCGTCTTATTGGTGGTTTTAAAAGCTATAATC
TATCAAAAAAACATGAACAAAATCATAATTAA

Upstream 100 bases:

>100_bases
TGAAAATAATAATATTTTAGAATCTGCCGAAATTATATCAAAGTATGTTGATAAAATTCTGAAAAAACATGAAATAAACC
CGTAATTTAATGTGATTAAT

Downstream 100 bases:

>100_bases
TTTAAAAATAGTTTAAATATATATCTAAATATATATCTAAATATATTTTAAAATGCGCCTAATGTTATTCGATGTCATTT
AAAAGACTTAGAAGTCCTTG

Product: rhodanese domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MDEETLSRLLTFKNDVVLAIRLSTGQKMILGNNIVLSGKLSGKIASFILENSKKIEKPEVIDFNGEMIYFEPINIKKYLD
SIGKELSDELITLKNFETMNIDEIQVVDARSPKEYFEKTVPGAVNIPLFLTEEHEKIGKTYKNEGKEIAMNMAAQIIQEG
IKRIVFESLKLDSNKEIIVFCARGGMRSQSVSTILKLLGFKVKRLIGGFKSYNLSKKHEQNHN

Sequences:

>Translated_223_residues
MDEETLSRLLTFKNDVVLAIRLSTGQKMILGNNIVLSGKLSGKIASFILENSKKIEKPEVIDFNGEMIYFEPINIKKYLD
SIGKELSDELITLKNFETMNIDEIQVVDARSPKEYFEKTVPGAVNIPLFLTEEHEKIGKTYKNEGKEIAMNMAAQIIQEG
IKRIVFESLKLDSNKEIIVFCARGGMRSQSVSTILKLLGFKVKRLIGGFKSYNLSKKHEQNHN
>Mature_223_residues
MDEETLSRLLTFKNDVVLAIRLSTGQKMILGNNIVLSGKLSGKIASFILENSKKIEKPEVIDFNGEMIYFEPINIKKYLD
SIGKELSDELITLKNFETMNIDEIQVVDARSPKEYFEKTVPGAVNIPLFLTEEHEKIGKTYKNEGKEIAMNMAAQIIQEG
IKRIVFESLKLDSNKEIIVFCARGGMRSQSVSTILKLLGFKVKRLIGGFKSYNLSKKHEQNHN

Specific function: Unknown

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Escherichia coli, GI1786712, Length=122, Percent_Identity=27.0491803278689, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763 [H]

Pfam domain/function: PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 25275; Mature: 25275

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEETLSRLLTFKNDVVLAIRLSTGQKMILGNNIVLSGKLSGKIASFILENSKKIEKPEV
CCHHHHHHHHHCCCCEEEEEEECCCCEEEECCCEEEECCCCHHHHHHHHHCCCCCCCCCE
IDFNGEMIYFEPINIKKYLDSIGKELSDELITLKNFETMNIDEIQVVDARSPKEYFEKTV
EECCCCEEEEECCCHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEECCCHHHHHHHHC
PGAVNIPLFLTEEHEKIGKTYKNEGKEIAMNMAAQIIQEGIKRIVFESLKLDSNKEIIVF
CCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
CARGGMRSQSVSTILKLLGFKVKRLIGGFKSYNLSKKHEQNHN
ECCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHCCCCC
>Mature Secondary Structure
MDEETLSRLLTFKNDVVLAIRLSTGQKMILGNNIVLSGKLSGKIASFILENSKKIEKPEV
CCHHHHHHHHHCCCCEEEEEEECCCCEEEECCCEEEECCCCHHHHHHHHHCCCCCCCCCE
IDFNGEMIYFEPINIKKYLDSIGKELSDELITLKNFETMNIDEIQVVDARSPKEYFEKTV
EECCCCEEEEECCCHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEECCCHHHHHHHHC
PGAVNIPLFLTEEHEKIGKTYKNEGKEIAMNMAAQIIQEGIKRIVFESLKLDSNKEIIVF
CCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
CARGGMRSQSVSTILKLLGFKVKRLIGGFKSYNLSKKHEQNHN
ECCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]