Click here to switch to the map view.

The map label for this gene is polC [H]

Identifier: 150394428

GI number: 150394428

Start: 2079802

End: 2080356

Strand: Direct

Name: polC [H]

Synonym: SaurJH1_1982

Alternate gene names: 150394428

Gene position: 2079802-2080356 (Clockwise)

Preceding gene: 150394427

Following gene: 150394437

Centisome position: 71.56

GC content: 31.89

Gene sequence:

>555_bases
ATGATACAAGATGCGTTTGTTGCACTTGATTTTGAAACAGCAAATGGTAAACGTACAAGTATTTGTTCTGTCGGAATGGT
TAAAGTCATTGATAGTCAAATAACAGAAACATTTCATACTCTTGTGAATCCGCAAGACTATTTTTCACAACAAAATATTA
AAGTTCATGGCATACAACCAGAAGATGTTGAAAATGCACCTACGTTTGACTACGTATTTCCATATATGATGCAATTTATT
GCAGATTTACCTGTTGTCGCACATAACGCGGCATTTGATATGAACGTCTTACATCAAAGCATTCAAAATATTGGTTTACC
AACTCCAAATTTAACTTACTTTTGTAGTTATCAACTTGCTAAAAGAACCGTTGATTCGTATCGATACGGTTTAAAACATA
TGATGGAGTTTTATCAATTAGATTTTCATGGTCATCATGATGCATTGAATGATGCCAAAGCATGCGCAATGATTACTTTT
AGGCTACTGAAAAATTATGAAAATTTAACATATGTAACTAATATTTATGGTAAAAATCTAAAAGATAAAGGCTAG

Upstream 100 bases:

>100_bases
TTCACGTTATACCTTCACGTATAATATTATGTATCGTTTGTAAGCAAATGACTAAAAGTCTATTAATATATACATTTAAT
TAATTGAAAGGATTGACTAC

Downstream 100 bases:

>100_bases
GACTAAATAAAATACTCCCTTCAAAAGTAAGCATTGTAAAAATGTAAACTTTGCAGGGAGCTTTATTTTATATAAAGTCA
TATATCGTCATATTTTTATT

Product: exonuclease RNase T and DNA polymerase III

Products: NA

Alternate protein names: PolIII [H]

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFI
ADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITF
RLLKNYENLTYVTNIYGKNLKDKG

Sequences:

>Translated_184_residues
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFI
ADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITF
RLLKNYENLTYVTNIYGKNLKDKG
>Mature_184_residues
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFI
ADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITF
RLLKNYENLTYVTNIYGKNLKDKG

Specific function: Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011708
- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR023223
- InterPro:   IPR016027
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR006308
- InterPro:   IPR012337 [H]

Pfam domain/function: PF07733 DNA_pol3_alpha; PF00929 Exonuc_X-T; PF02811 PHP [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 21106; Mature: 21106

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQP
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEECCCC
EDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLA
CCCCCCCCHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHH
KRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNL
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCC
KDKG
CCCC
>Mature Secondary Structure
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQP
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEECCCC
EDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLA
CCCCCCCCHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHH
KRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNL
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCC
KDKG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]