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The map label for this gene is lysA [H]

Identifier: 150010400

GI number: 150010400

Start: 4672668

End: 4673891

Strand: Direct

Name: lysA [H]

Synonym: BDI_3837

Alternate gene names: 150010400

Gene position: 4672668-4673891 (Clockwise)

Preceding gene: 150010399

Following gene: 150010401

Centisome position: 97.12

GC content: 37.99

Gene sequence:

>1224_bases
ATGGAACAAGCTATTAGGAATCTTATTAAGAGTAATGGTACTCCTTTTTATCTGTTTGATGAAAAAGGCTTCATTGATAA
TTATAGAAAGCTGGAAGGTATCTTCAAGGCTATTTATCCTAATTACCAGCTTTCTTATTCCTACAAGACCAATTATACTC
CTTTTGTTTGCCAATTGGTTAGATCGTTGGGTGGGTATGCCGAGGTAGTTTCTGATATGGAATATACACTGGCTAAAAAG
TTAGGTTATGATAACAAACAGATTGTTTACAATGGCCCCTCAAAAGGAGAGGAGATGTTTGATCACTTAGAACATCAAGG
TATATTGAATATAGATAGTCTAGATGAGGCGAAGCGTATAATTTCTTATGTTAAAGGGCATCCTGATAGAAATTATACGG
TTGGTATTCGTATAAATATGCATGTGGGTGGTGATTTTATTTCTCGTTTTGGGCTAGTGCCAGAAAGTAAGGAATTACAG
GAAACGGTTTCTTTAATTAAAGAAACTGTCAATCTGAATTTGATCGGTCTGCATTGTCATATCAGTCGCTCAAGAGGTGT
GGAGGCTTGGACTAAACGTACGGAGATTATGTTGAAAGCGGCGGATGACTATATTGACGGGGTTCCAGCTTATATTTCGT
TGGGAAGCGGTATGTATGCTGATATGCCTGAATTTTTGAAACAACAGTTTGGGGGTGATACCGTGCCTACTTATGAAGAT
TATGCGGATTGTACGATCCAGCCTTTTGCTGACCATTATAAAGATGTGGAAAATCAACCTATCTTATTTACTGAGCCTGG
TACTACTGTGGTAGCTCGTTATTTGAGTTTTGTAACGAAAGTTCTTAGCGTTAAAGAGGTAAGGGGACGATATATAGCTA
ATATGGATGGTGATTATCATAATTTGGGTGAAATCTGTACTATGAAAAAATTGCCGGTAACTGTTTTGTCAGGAGGTAAG
GAACAGCATACTTATACTAATATGGATATCATGGGATTCACATGTTTGGAACAAGATGTACTCTATCCGGGATTTGAACA
ATCTATCGCAGAAGGTGACATTTTGGTGTTCGACAATGTTGGTGGTTATTCCATTGTGTCTAAGCCACAATTCATCAAAC
CTCAAAGTGCCATGTATGTCCTGCGTACCAATGGTGAGGTGGAACAGATTATGCGGGCAGAGACTTTCGATGACGTATTC
AATAAATTTAGCTTTAAATTCTAG

Upstream 100 bases:

>100_bases
ATAATAATTAAGCGTATGACGAATGATTATGGTAATGATTTCAGACCTCATTTGAAAGAGTATCGAACCAATGAAATAAT
GAAATAAATATGTTATACTA

Downstream 100 bases:

>100_bases
AATCCATGAGAGATATAGTTGTATTAAGTTCGGCGTGTGGAGCATTCTTTATGCCGGGTTTCTTCAAATGTCTGAAAGCA
AATAAAGAAAGAAATATCAA

Product: diaminopimelate decarboxylase

Products: NA

Alternate protein names: DAP decarboxylase [H]

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MEQAIRNLIKSNGTPFYLFDEKGFIDNYRKLEGIFKAIYPNYQLSYSYKTNYTPFVCQLVRSLGGYAEVVSDMEYTLAKK
LGYDNKQIVYNGPSKGEEMFDHLEHQGILNIDSLDEAKRIISYVKGHPDRNYTVGIRINMHVGGDFISRFGLVPESKELQ
ETVSLIKETVNLNLIGLHCHISRSRGVEAWTKRTEIMLKAADDYIDGVPAYISLGSGMYADMPEFLKQQFGGDTVPTYED
YADCTIQPFADHYKDVENQPILFTEPGTTVVARYLSFVTKVLSVKEVRGRYIANMDGDYHNLGEICTMKKLPVTVLSGGK
EQHTYTNMDIMGFTCLEQDVLYPGFEQSIAEGDILVFDNVGGYSIVSKPQFIKPQSAMYVLRTNGEVEQIMRAETFDDVF
NKFSFKF

Sequences:

>Translated_407_residues
MEQAIRNLIKSNGTPFYLFDEKGFIDNYRKLEGIFKAIYPNYQLSYSYKTNYTPFVCQLVRSLGGYAEVVSDMEYTLAKK
LGYDNKQIVYNGPSKGEEMFDHLEHQGILNIDSLDEAKRIISYVKGHPDRNYTVGIRINMHVGGDFISRFGLVPESKELQ
ETVSLIKETVNLNLIGLHCHISRSRGVEAWTKRTEIMLKAADDYIDGVPAYISLGSGMYADMPEFLKQQFGGDTVPTYED
YADCTIQPFADHYKDVENQPILFTEPGTTVVARYLSFVTKVLSVKEVRGRYIANMDGDYHNLGEICTMKKLPVTVLSGGK
EQHTYTNMDIMGFTCLEQDVLYPGFEQSIAEGDILVFDNVGGYSIVSKPQFIKPQSAMYVLRTNGEVEQIMRAETFDDVF
NKFSFKF
>Mature_407_residues
MEQAIRNLIKSNGTPFYLFDEKGFIDNYRKLEGIFKAIYPNYQLSYSYKTNYTPFVCQLVRSLGGYAEVVSDMEYTLAKK
LGYDNKQIVYNGPSKGEEMFDHLEHQGILNIDSLDEAKRIISYVKGHPDRNYTVGIRINMHVGGDFISRFGLVPESKELQ
ETVSLIKETVNLNLIGLHCHISRSRGVEAWTKRTEIMLKAADDYIDGVPAYISLGSGMYADMPEFLKQQFGGDTVPTYED
YADCTIQPFADHYKDVENQPILFTEPGTTVVARYLSFVTKVLSVKEVRGRYIANMDGDYHNLGEICTMKKLPVTVLSGGK
EQHTYTNMDIMGFTCLEQDVLYPGFEQSIAEGDILVFDNVGGYSIVSKPQFIKPQSAMYVLRTNGEVEQIMRAETFDDVF
NKFSFKF

Specific function: Unknown

COG id: COG0019

COG function: function code E; Diaminopimelate decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009006
- InterPro:   IPR002986
- InterPro:   IPR022643
- InterPro:   IPR022657
- InterPro:   IPR022644
- InterPro:   IPR022653
- InterPro:   IPR000183 [H]

Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]

EC number: =4.1.1.20 [H]

Molecular weight: Translated: 46265; Mature: 46265

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQAIRNLIKSNGTPFYLFDEKGFIDNYRKLEGIFKAIYPNYQLSYSYKTNYTPFVCQLV
CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
RSLGGYAEVVSDMEYTLAKKLGYDNKQIVYNGPSKGEEMFDHLEHQGILNIDSLDEAKRI
HHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
ISYVKGHPDRNYTVGIRINMHVGGDFISRFGLVPESKELQETVSLIKETVNLNLIGLHCH
HHHHHCCCCCCEEEEEEEEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEEE
ISRSRGVEAWTKRTEIMLKAADDYIDGVPAYISLGSGMYADMPEFLKQQFGGDTVPTYED
ECCCCCCHHHHHHHHHEEEEHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCC
YADCTIQPFADHYKDVENQPILFTEPGTTVVARYLSFVTKVLSVKEVRGRYIANMDGDYH
CCCCEECHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHH
NLGEICTMKKLPVTVLSGGKEQHTYTNMDIMGFTCLEQDVLYPGFEQSIAEGDILVFDNV
HHHHHHHHCCCCEEEECCCCCCCEEECCEEEEEEHHHHCCCCCCHHHHHCCCCEEEEECC
GGYSIVSKPQFIKPQSAMYVLRTNGEVEQIMRAETFDDVFNKFSFKF
CCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEQAIRNLIKSNGTPFYLFDEKGFIDNYRKLEGIFKAIYPNYQLSYSYKTNYTPFVCQLV
CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
RSLGGYAEVVSDMEYTLAKKLGYDNKQIVYNGPSKGEEMFDHLEHQGILNIDSLDEAKRI
HHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
ISYVKGHPDRNYTVGIRINMHVGGDFISRFGLVPESKELQETVSLIKETVNLNLIGLHCH
HHHHHCCCCCCEEEEEEEEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEEE
ISRSRGVEAWTKRTEIMLKAADDYIDGVPAYISLGSGMYADMPEFLKQQFGGDTVPTYED
ECCCCCCHHHHHHHHHEEEEHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCC
YADCTIQPFADHYKDVENQPILFTEPGTTVVARYLSFVTKVLSVKEVRGRYIANMDGDYH
CCCCEECHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHH
NLGEICTMKKLPVTVLSGGKEQHTYTNMDIMGFTCLEQDVLYPGFEQSIAEGDILVFDNV
HHHHHHHHCCCCEEEECCCCCCCEEECCEEEEEEHHHHCCCCCCHHHHHCCCCEEEEECC
GGYSIVSKPQFIKPQSAMYVLRTNGEVEQIMRAETFDDVFNKFSFKF
CCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]