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The map label for this gene is xerD [C]

Identifier: 150010374

GI number: 150010374

Start: 4643186

End: 4644118

Strand: Direct

Name: xerD [C]

Synonym: BDI_3811

Alternate gene names: 150010374

Gene position: 4643186-4644118 (Clockwise)

Preceding gene: 150010368

Following gene: 150010377

Centisome position: 96.5

GC content: 48.98

Gene sequence:

>933_bases
ATGAAACAGTATGATTTAGCGGAGGGTATGCGGATGTATATAGCCCGATTGAGAGAGCAAGGGCGCTATTCGTCCGCCAA
GAGTTATCAGGATGCCTTGAATTCATTCCTGCGTTTTTGTGGGCAGGAGATGATCCTTTATACCCGTATTGACCGGGAAA
TGCTTTTGAGATATCAAGATTATTTGCGGGACCGGGAATGCTCGTGGAATACGGTATCTACCTATATGCGTAGGATTCGC
CGTGTGTATGGATTGGCGATGGAGAATGGGGAGGCTCCTTTTTCCCGTTATTTGTTCAAGGGGATTTTCCTGGGAGTGAA
AAGCAAACAGAAGAAGGCGTTGCCTGCGGAGTCCTTGCGTTTGTTGATGACCGCTCCGCTGGCTGCTCCGGAGTTGCGCA
AAACACAGCGGGCATTGTGTTTGATGTTCTTGTTTTGCGGTATGGCGTTTGTCGATTTCGCTCATTTGAAAAAGAGTGAT
ATCCGGAATGGGGTCTTGAGGTATAATCGCCAGAAGACGGGTACGCCGATGTTGGTCGAGATACAGCCTGTGGCCAGGGA
GTTGTTGGCTGCGCTGATGACCGACACGCTTCGCGATTCTCCTTATCTATTCACTTTCTTGAGCGGGACGAAAACGGGTG
AAGAGGCCTTCCGGGAATATACCTCTGCCTTGGCTGATTTTAACAGGTCCCTGAAGGAGCTGGCAAATGCCTGTGGTGTG
ACGGAAATAGTTACCTCGTATTCGATCCGTCACTCTTTCGCTACGACCTTGAAGGAACAGGGTGTACCGATCGAGATGAT
CAGCGAATTGCTGGGACACCAATCGATCAAGACCACGCAAATCTATTTGAAAAGCTTCTCGTTGGATAGGATGTCTGCGG
TGAACAAGGCTTGCTTCGAGAGTATATATAATGAGGTATCAAAGGTGGGGTAG

Upstream 100 bases:

>100_bases
CGATCTTGTCCATGGTATTTATTTTTCTGCAAATGTAAGTAGACAATCACGAATTAACCGTGTTTTTTGTTGTAATTTAC
TTTTTTTATACGTGAATATT

Downstream 100 bases:

>100_bases
GCGATAGGCTACTTGGGAAGTAGCGTAAAAAGTGAGAAAATCATTATTACCCTGCTGTAGAGACGGAGTGTGCTCCGTCT
CCCACCGTCAGGTAGTAATT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKQYDLAEGMRMYIARLREQGRYSSAKSYQDALNSFLRFCGQEMILYTRIDREMLLRYQDYLRDRECSWNTVSTYMRRIR
RVYGLAMENGEAPFSRYLFKGIFLGVKSKQKKALPAESLRLLMTAPLAAPELRKTQRALCLMFLFCGMAFVDFAHLKKSD
IRNGVLRYNRQKTGTPMLVEIQPVARELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNRSLKELANACGV
TEIVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKACFESIYNEVSKVG

Sequences:

>Translated_310_residues
MKQYDLAEGMRMYIARLREQGRYSSAKSYQDALNSFLRFCGQEMILYTRIDREMLLRYQDYLRDRECSWNTVSTYMRRIR
RVYGLAMENGEAPFSRYLFKGIFLGVKSKQKKALPAESLRLLMTAPLAAPELRKTQRALCLMFLFCGMAFVDFAHLKKSD
IRNGVLRYNRQKTGTPMLVEIQPVARELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNRSLKELANACGV
TEIVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKACFESIYNEVSKVG
>Mature_310_residues
MKQYDLAEGMRMYIARLREQGRYSSAKSYQDALNSFLRFCGQEMILYTRIDREMLLRYQDYLRDRECSWNTVSTYMRRIR
RVYGLAMENGEAPFSRYLFKGIFLGVKSKQKKALPAESLRLLMTAPLAAPELRKTQRALCLMFLFCGMAFVDFAHLKKSD
IRNGVLRYNRQKTGTPMLVEIQPVARELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNRSLKELANACGV
TEIVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKACFESIYNEVSKVG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35641; Mature: 35641

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQYDLAEGMRMYIARLREQGRYSSAKSYQDALNSFLRFCGQEMILYTRIDREMLLRYQD
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
YLRDRECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFLGVKSKQKKALPAESLR
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHH
LLMTAPLAAPELRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
IQPVARELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNRSLKELANACGV
EHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCH
TEIVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKACFE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHH
SIYNEVSKVG
HHHHHHHHCC
>Mature Secondary Structure
MKQYDLAEGMRMYIARLREQGRYSSAKSYQDALNSFLRFCGQEMILYTRIDREMLLRYQD
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
YLRDRECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFLGVKSKQKKALPAESLR
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHH
LLMTAPLAAPELRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
IQPVARELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNRSLKELANACGV
EHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCH
TEIVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKACFE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHH
SIYNEVSKVG
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA