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The map label for this gene is xerD [H]

Identifier: 150010186

GI number: 150010186

Start: 4422067

End: 4422999

Strand: Direct

Name: xerD [H]

Synonym: BDI_3609

Alternate gene names: 150010186

Gene position: 4422067-4422999 (Clockwise)

Preceding gene: 150010185

Following gene: 150010187

Centisome position: 91.91

GC content: 44.91

Gene sequence:

>933_bases
ATGAATGAGAATGATTTTGTGGTGGGTGTACTTACGTATATCACCTGCCTGCGTGAGAAAAAGCGTTATTCCACGGCGAA
GAGTTATCAAGATGCGTTGAGGTCGTTTAAATGTTTTTGTGGCCGGAAAGAGATTCCTTATGCGTATATTAATCGGGATA
CACTTTTGCGTTATCAATCTTGGCTGTTGGCCAAGGGATGTGCTCGTAACACGGTATCTACTTATATGCGCCGGATTCGT
CACATCTATAATTTAGCGGTAGAGGTGGGTGAGGCTGCCTATATCCCTCATTTGTTTAAGAATGTGTTTACGGGGGTTGA
GAGTAAACGTAAAAAGGCGTTGCCTTCGGAAAGCCTGCGCTTGCTGATGACAAGCCCAGTGACAGATCCGCAACAGAAGA
GGACTCAATCAGCCTTTTGCCTGATGTTTTTGTTTTGCGGGATGGCTTTCGTAGATTTGGCGCATTTGCGAAAGGAGGAT
ATCAAGGAAGGGATCTTGTCTTATTATCGGCAGAAAAGCGGATCCCTTATACAGGTGGAGATCCCAGCGGAGGCACAAGG
GCTGCTGAATGAGTTGGCAGCCGATACAACCGAGGATTCGCCCTATCTGTTTCCATTTTTAGAGGGAATGAAGACCGGTG
AGGATGCCTACAAGGAATATAATACCGTATTAGGAGGTTTTAACCGCAGATTGAAAACACTGTCGGAATCCATCGGTATT
CGTACTCGGGTTACCTCATACACGATTCGTCACTCTTTCGCCACGACCTTGAAGGAGCAAAACGTACCGATTGAGATGAT
CAGTGAACTGTTAGGGCATAAATCTATCAAGACTACGCAAATATACTTGAAGAGTTTCTCTTTAGAAAAGCTCTCGACCG
TAAACAAACTTTGTTTCGAGAGTGTGTATAATTATGCGCCGAAAGTAGGGTGA

Upstream 100 bases:

>100_bases
AATATATTTCTTTAAGGATTTTATGAAGATCCTCTATCTTTCCTGTGTAAACGGAGAGATAGAGGATTTTTTTATGTATT
AATTCTTAAGGAGATAAAGT

Downstream 100 bases:

>100_bases
AGAAAAGTACGCTACTTGGCGAGTAGCGCTCATTTCATGCCGCAAATGTAGTAAAAAATAACATAACACAAGCAAATATT
AGGCTTTGTTTGTGTTTCAA

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MNENDFVVGVLTYITCLREKKRYSTAKSYQDALRSFKCFCGRKEIPYAYINRDTLLRYQSWLLAKGCARNTVSTYMRRIR
HIYNLAVEVGEAAYIPHLFKNVFTGVESKRKKALPSESLRLLMTSPVTDPQQKRTQSAFCLMFLFCGMAFVDLAHLRKED
IKEGILSYYRQKSGSLIQVEIPAEAQGLLNELAADTTEDSPYLFPFLEGMKTGEDAYKEYNTVLGGFNRRLKTLSESIGI
RTRVTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIYLKSFSLEKLSTVNKLCFESVYNYAPKVG

Sequences:

>Translated_310_residues
MNENDFVVGVLTYITCLREKKRYSTAKSYQDALRSFKCFCGRKEIPYAYINRDTLLRYQSWLLAKGCARNTVSTYMRRIR
HIYNLAVEVGEAAYIPHLFKNVFTGVESKRKKALPSESLRLLMTSPVTDPQQKRTQSAFCLMFLFCGMAFVDLAHLRKED
IKEGILSYYRQKSGSLIQVEIPAEAQGLLNELAADTTEDSPYLFPFLEGMKTGEDAYKEYNTVLGGFNRRLKTLSESIGI
RTRVTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIYLKSFSLEKLSTVNKLCFESVYNYAPKVG
>Mature_310_residues
MNENDFVVGVLTYITCLREKKRYSTAKSYQDALRSFKCFCGRKEIPYAYINRDTLLRYQSWLLAKGCARNTVSTYMRRIR
HIYNLAVEVGEAAYIPHLFKNVFTGVESKRKKALPSESLRLLMTSPVTDPQQKRTQSAFCLMFLFCGMAFVDLAHLRKED
IKEGILSYYRQKSGSLIQVEIPAEAQGLLNELAADTTEDSPYLFPFLEGMKTGEDAYKEYNTVLGGFNRRLKTLSESIGI
RTRVTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIYLKSFSLEKLSTVNKLCFESVYNYAPKVG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35508; Mature: 35508

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNENDFVVGVLTYITCLREKKRYSTAKSYQDALRSFKCFCGRKEIPYAYINRDTLLRYQS
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHH
WLLAKGCARNTVSTYMRRIRHIYNLAVEVGEAAYIPHLFKNVFTGVESKRKKALPSESLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LLMTSPVTDPQQKRTQSAFCLMFLFCGMAFVDLAHLRKEDIKEGILSYYRQKSGSLIQVE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
IPAEAQGLLNELAADTTEDSPYLFPFLEGMKTGEDAYKEYNTVLGGFNRRLKTLSESIGI
CCHHHHHHHHHHHCCCCCCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
RTRVTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIYLKSFSLEKLSTVNKLCFE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SVYNYAPKVG
HHHHHCCCCC
>Mature Secondary Structure
MNENDFVVGVLTYITCLREKKRYSTAKSYQDALRSFKCFCGRKEIPYAYINRDTLLRYQS
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHH
WLLAKGCARNTVSTYMRRIRHIYNLAVEVGEAAYIPHLFKNVFTGVESKRKKALPSESLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LLMTSPVTDPQQKRTQSAFCLMFLFCGMAFVDLAHLRKEDIKEGILSYYRQKSGSLIQVE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
IPAEAQGLLNELAADTTEDSPYLFPFLEGMKTGEDAYKEYNTVLGGFNRRLKTLSESIGI
CCHHHHHHHHHHHCCCCCCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
RTRVTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIYLKSFSLEKLSTVNKLCFE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SVYNYAPKVG
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]