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The map label for this gene is sufS [C]

Identifier: 150010123

GI number: 150010123

Start: 4339149

End: 4340363

Strand: Direct

Name: sufS [C]

Synonym: BDI_3543

Alternate gene names: 150010123

Gene position: 4339149-4340363 (Clockwise)

Preceding gene: 150010122

Following gene: 150010124

Centisome position: 90.19

GC content: 46.75

Gene sequence:

>1215_bases
ATGTTAGACGTTCAAGCGATCCGAAAAGACTTTCCGATCTTGGATCATAAGATATACGATAAACCGCTGATATATTTCGA
TAATGGTGCTACTACCCAGAAACCTCGTCAAGTGGTAGAAAAGATAGAGAATGGATATTATAACGTAAACGCTAATATCC
ACCGAGGCGTACATTTCTTGAGCCAAGCGGCGACAGAGGCGCATGAGGAGGCTCGCAAAACGGTACAGCATTTCTTGAAT
GCCCGTTTCTCGAATGAGATTATTTTTACCCGGGGAACTACGGAATCCATTAATTTGATCGCTTCCAGCTTTACGGATGA
ATGTATGTCGGCAGGGGATGAGGTGATCGTGTCCGTGATGGAGCATCATTCCAATATCGTTCCTTGGCAGATACAAGCGG
CCCGGAAAGGTATTACGTTGAAGGTGATCCCGATGAATGAGAAAGGGGAGTTGAATCTGGATGAGTATCGTAAATTATTC
TCGGATAAGACTCGTTTGGTTTCCGTGACTCATGTGTCTAATGTCTTGGGTACGGTGAATCCGGTAAAGGCGATGATCGA
GATCGCTCATGAACAAGACGTGCCGGTGTTGATAGACGGGGCTCAAGCCGTTCCGCATATGAAGGTGGATGTGCAGGACT
TGGATGCGGAGTTTTATGTTTTCTCCGGGCATAAGATTTACGGACCGACGGGTATCGGGGTCTTGTATGGTAAAGAGGAG
TGGTTGGATAAACTTCCTCCGTATCAGGGAGGAGGCGAGATGATCGCTACGGTCTCGTTCGAGAAGACAACTTTTAATGA
ACTTCCCTTTAAGTTCGAGGCGGGAACTCCGGATTATATTGGTAGTACGGCGTTGGCGGAAGCTTTGCGGTATGTAGACC
GGATCGGTATAGAGAATATAGCTACTTATGAGGATGAGCTTCTACGATATGCGACCGCTGGATTAAATACGATTGAAGGG
ATGCGTATTTTTGGACAAGCGGATCATAAAGGAGCGGTGCTTTCTTTTTTGGTGGGTAATATCCATCATTACGATATGGG
GATGTTGCTGGACCGTCTGGGAATAGCGGTTCGTACAGGGCATCATTGTGCCCAGCCTTTGATGCATGCCTTAGGAATCG
AGGGTACGGTGCGGGCGTCTTTCTCCTTTTATAATACGAAAGAGGAGATCGATACGTTCATCGCAGGTGTGGAACGAGTT
CGGAAGATGTTTTGA

Upstream 100 bases:

>100_bases
ATATCTGTTAGGTAATGATAAAAAAGGCTTTCTTTCAGCGAGAAAGCCTTTTTTTTGTATCTTTGGCTCTCGTAATTTTA
AGACAAAAAGAAGTAAGACT

Downstream 100 bases:

>100_bases
GTATGATGTATTATATTAAGAAATATCCGTTTTCACTGGCGATTATATTGGTCGTTATTTACTTGTCGTTCTTTAAGCCG
CCGAAGATGGATGATATCCC

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MLDVQAIRKDFPILDHKIYDKPLIYFDNGATTQKPRQVVEKIENGYYNVNANIHRGVHFLSQAATEAHEEARKTVQHFLN
ARFSNEIIFTRGTTESINLIASSFTDECMSAGDEVIVSVMEHHSNIVPWQIQAARKGITLKVIPMNEKGELNLDEYRKLF
SDKTRLVSVTHVSNVLGTVNPVKAMIEIAHEQDVPVLIDGAQAVPHMKVDVQDLDAEFYVFSGHKIYGPTGIGVLYGKEE
WLDKLPPYQGGGEMIATVSFEKTTFNELPFKFEAGTPDYIGSTALAEALRYVDRIGIENIATYEDELLRYATAGLNTIEG
MRIFGQADHKGAVLSFLVGNIHHYDMGMLLDRLGIAVRTGHHCAQPLMHALGIEGTVRASFSFYNTKEEIDTFIAGVERV
RKMF

Sequences:

>Translated_404_residues
MLDVQAIRKDFPILDHKIYDKPLIYFDNGATTQKPRQVVEKIENGYYNVNANIHRGVHFLSQAATEAHEEARKTVQHFLN
ARFSNEIIFTRGTTESINLIASSFTDECMSAGDEVIVSVMEHHSNIVPWQIQAARKGITLKVIPMNEKGELNLDEYRKLF
SDKTRLVSVTHVSNVLGTVNPVKAMIEIAHEQDVPVLIDGAQAVPHMKVDVQDLDAEFYVFSGHKIYGPTGIGVLYGKEE
WLDKLPPYQGGGEMIATVSFEKTTFNELPFKFEAGTPDYIGSTALAEALRYVDRIGIENIATYEDELLRYATAGLNTIEG
MRIFGQADHKGAVLSFLVGNIHHYDMGMLLDRLGIAVRTGHHCAQPLMHALGIEGTVRASFSFYNTKEEIDTFIAGVERV
RKMF
>Mature_404_residues
MLDVQAIRKDFPILDHKIYDKPLIYFDNGATTQKPRQVVEKIENGYYNVNANIHRGVHFLSQAATEAHEEARKTVQHFLN
ARFSNEIIFTRGTTESINLIASSFTDECMSAGDEVIVSVMEHHSNIVPWQIQAARKGITLKVIPMNEKGELNLDEYRKLF
SDKTRLVSVTHVSNVLGTVNPVKAMIEIAHEQDVPVLIDGAQAVPHMKVDVQDLDAEFYVFSGHKIYGPTGIGVLYGKEE
WLDKLPPYQGGGEMIATVSFEKTTFNELPFKFEAGTPDYIGSTALAEALRYVDRIGIENIATYEDELLRYATAGLNTIEG
MRIFGQADHKGAVLSFLVGNIHHYDMGMLLDRLGIAVRTGHHCAQPLMHALGIEGTVRASFSFYNTKEEIDTFIAGVERV
RKMF

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Homo sapiens, GI32307132, Length=232, Percent_Identity=30.6034482758621, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI156713448, Length=260, Percent_Identity=26.9230769230769, Blast_Score=73, Evalue=6e-13,
Organism=Escherichia coli, GI1787970, Length=405, Percent_Identity=49.6296296296296, Blast_Score=423, Evalue=1e-119,
Organism=Escherichia coli, GI1789175, Length=397, Percent_Identity=40.0503778337531, Blast_Score=310, Evalue=8e-86,
Organism=Escherichia coli, GI48994898, Length=401, Percent_Identity=28.428927680798, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI193211090, Length=394, Percent_Identity=27.1573604060914, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI25143064, Length=229, Percent_Identity=27.9475982532751, Blast_Score=97, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6319831, Length=399, Percent_Identity=25.8145363408521, Blast_Score=108, Evalue=1e-24,
Organism=Drosophila melanogaster, GI20129463, Length=242, Percent_Identity=29.7520661157025, Blast_Score=100, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 45250; Mature: 45250

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDVQAIRKDFPILDHKIYDKPLIYFDNGATTQKPRQVVEKIENGYYNVNANIHRGVHFL
CCCHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHH
SQAATEAHEEARKTVQHFLNARFSNEIIFTRGTTESINLIASSFTDECMSAGDEVIVSVM
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
EHHSNIVPWQIQAARKGITLKVIPMNEKGELNLDEYRKLFSDKTRLVSVTHVSNVLGTVN
HHCCCCCCEEEHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCHHEEEHHHHHHHHCCCH
PVKAMIEIAHEQDVPVLIDGAQAVPHMKVDVQDLDAEFYVFSGHKIYGPTGIGVLYGKEE
HHHHHHHHHHCCCCCEEEECCCCCCCEEEEHHHCCCEEEEEECCEEECCCCCEEEECCHH
WLDKLPPYQGGGEMIATVSFEKTTFNELPFKFEAGTPDYIGSTALAEALRYVDRIGIENI
HHHHCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCHH
ATYEDELLRYATAGLNTIEGMRIFGQADHKGAVLSFLVGNIHHYDMGMLLDRLGIAVRTG
HHHHHHHHHHHHHCCCHHCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
HHCAQPLMHALGIEGTVRASFSFYNTKEEIDTFIAGVERVRKMF
HHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDVQAIRKDFPILDHKIYDKPLIYFDNGATTQKPRQVVEKIENGYYNVNANIHRGVHFL
CCCHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHH
SQAATEAHEEARKTVQHFLNARFSNEIIFTRGTTESINLIASSFTDECMSAGDEVIVSVM
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
EHHSNIVPWQIQAARKGITLKVIPMNEKGELNLDEYRKLFSDKTRLVSVTHVSNVLGTVN
HHCCCCCCEEEHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCHHEEEHHHHHHHHCCCH
PVKAMIEIAHEQDVPVLIDGAQAVPHMKVDVQDLDAEFYVFSGHKIYGPTGIGVLYGKEE
HHHHHHHHHHCCCCCEEEECCCCCCCEEEEHHHCCCEEEEEECCEEECCCCCEEEECCHH
WLDKLPPYQGGGEMIATVSFEKTTFNELPFKFEAGTPDYIGSTALAEALRYVDRIGIENI
HHHHCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCHH
ATYEDELLRYATAGLNTIEGMRIFGQADHKGAVLSFLVGNIHHYDMGMLLDRLGIAVRTG
HHHHHHHHHHHHHCCCHHCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
HHCAQPLMHALGIEGTVRASFSFYNTKEEIDTFIAGVERVRKMF
HHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA