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The map label for this gene is ycgR [H]

Identifier: 150010089

GI number: 150010089

Start: 4295147

End: 4296043

Strand: Direct

Name: ycgR [H]

Synonym: BDI_3509

Alternate gene names: 150010089

Gene position: 4295147-4296043 (Clockwise)

Preceding gene: 150010088

Following gene: 150010090

Centisome position: 89.27

GC content: 44.82

Gene sequence:

>897_bases
ATGAACACTTTGATAGAAACATTAAAATACTTCGTGTTTATCACGGCAGAATTGATAGCACTGTTCCTGCTGATCAGTGC
GGTTGTCGAAATAATACTGATGTATATTCCGCAAGACAAAATCAAGCAATGGCTTTCTGGACGTGGAATCTTAGGCAATG
TCATGGCAGCAGGATTCGGGGCACTCACCCCATTTTGCGCCTGTTCCACCATTCCGATGACAGTCGGTTTCCTCAATGCC
GGAGTTCCTTTTGGAAGTACCATGTCATTCCTTATAGCTTCTCCGCTGCTCAATCCTATAATAATAGGAATGTTGGGGGC
AATGGTCGGTGTAAAGGCGATGCTTGCATATTTCATTATTGCTTTCGCCGCCTCGGTCCTGTTCGGTGTGGTATTGGAAA
AAATGGGGATGCAGAAGTATGTGAAAAACGTACGTCTCCGTAACGAACATAACGTAGGCAGTGAGGACAAAAGACAATGG
ACTATAAAGCGTAAACTGAGAGAAGCATTCGTTTCGGCTTGGGACAGTCTGCGCCCTATTTTAGGTTACTTGTTAATTGG
AGTCGCACTCGGAGCAGGGATATACGGCTATATGCCACAAGATTTTGTGCTGAAGATAGCCGGACCAGACAATCTGTTTG
CCATTCCTATCGCAGCCGTATTGGGCATACCGTTGTATATCCGTGCTGAAACGGCAATCCCTATCGGGGTCGCACTGATG
GCTAAGGGTATGAGCATCGGCACTGTGATAGCGTTGGTTATTGGCGGTGCAGGTATGGCAATTCCGGAAATGACAATGCT
TGCAAGCATTTTCCGTAAGAAATTGGTCGCAACGATTGTCGTTGTAATATTCCTTACGGCTGTAATTACAGGTTATTTAT
TTAACATATTATTGTAA

Upstream 100 bases:

>100_bases
GCAGACCGTACAGAAATGGCTGAATGGAATTGTTGGTTGCCTGTTCGTAGGAATAGGAGTATATTATTGTATCGTAATGT
TTTAATTAACCAAGGATGCA

Downstream 100 bases:

>100_bases
GACAATTAAATATCAAAAGAATATGGAAACAAAAAAAGAAAACAAAAAAGGATTCTGGGCTTCATTATTCTCTCCGAAGC
CTTGCTCGTGTTCATGTGGC

Product: putative permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNTLIETLKYFVFITAELIALFLLISAVVEIILMYIPQDKIKQWLSGRGILGNVMAAGFGALTPFCACSTIPMTVGFLNA
GVPFGSTMSFLIASPLLNPIIIGMLGAMVGVKAMLAYFIIAFAASVLFGVVLEKMGMQKYVKNVRLRNEHNVGSEDKRQW
TIKRKLREAFVSAWDSLRPILGYLLIGVALGAGIYGYMPQDFVLKIAGPDNLFAIPIAAVLGIPLYIRAETAIPIGVALM
AKGMSIGTVIALVIGGAGMAIPEMTMLASIFRKKLVATIVVVIFLTAVITGYLFNILL

Sequences:

>Translated_298_residues
MNTLIETLKYFVFITAELIALFLLISAVVEIILMYIPQDKIKQWLSGRGILGNVMAAGFGALTPFCACSTIPMTVGFLNA
GVPFGSTMSFLIASPLLNPIIIGMLGAMVGVKAMLAYFIIAFAASVLFGVVLEKMGMQKYVKNVRLRNEHNVGSEDKRQW
TIKRKLREAFVSAWDSLRPILGYLLIGVALGAGIYGYMPQDFVLKIAGPDNLFAIPIAAVLGIPLYIRAETAIPIGVALM
AKGMSIGTVIALVIGGAGMAIPEMTMLASIFRKKLVATIVVVIFLTAVITGYLFNILL
>Mature_298_residues
MNTLIETLKYFVFITAELIALFLLISAVVEIILMYIPQDKIKQWLSGRGILGNVMAAGFGALTPFCACSTIPMTVGFLNA
GVPFGSTMSFLIASPLLNPIIIGMLGAMVGVKAMLAYFIIAFAASVLFGVVLEKMGMQKYVKNVRLRNEHNVGSEDKRQW
TIKRKLREAFVSAWDSLRPILGYLLIGVALGAGIYGYMPQDFVLKIAGPDNLFAIPIAAVLGIPLYIRAETAIPIGVALM
AKGMSIGTVIALVIGGAGMAIPEMTMLASIFRKKLVATIVVVIFLTAVITGYLFNILL

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005524 [H]

Pfam domain/function: PF03773 DUF318 [H]

EC number: NA

Molecular weight: Translated: 32100; Mature: 32100

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure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HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]