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The map label for this gene is ydeC [H]

Identifier: 150009874

GI number: 150009874

Start: 3979608

End: 3980489

Strand: Direct

Name: ydeC [H]

Synonym: BDI_3290

Alternate gene names: 150009874

Gene position: 3979608-3980489 (Clockwise)

Preceding gene: 150009873

Following gene: 150009875

Centisome position: 82.71

GC content: 44.56

Gene sequence:

>882_bases
ATGAAACCATTATTTCAAGAACTGCCATTCCCGATAGATAGTCACATTCATTTCTATGTGGAGGATCTACCGCATTTTAT
AGTGCCTTGGCACTACCATCCGGCTATTGAGATAATGTATATCACAAGTGGTACGGGTACTCGCTTTGTCGGGGATCATG
TGGAAGGATATTTCGAGGGCGATGTTTGTATGATCGGCCCTCAACTGCCACATGAGTGGAGAAACGACCCCGTTTATTTC
GATAAGAGCTCCGGCTTGCGGGCTACTTGTATTTGCTTGTTCTTCAAGCGTCAGATTTTTGAACCTAATTTAATCCGTCT
TCCGGAGATGAATAATATCCGGGAATTGATAGAGCGTTCCCGTAGAGGAATTAAGTTTGTGGGTAAGTCCCGGAAGAAGA
TTGCCGAGCTGATCAGCCAATCCGCCAATGAGACGGGAGCGAGTAGGGTGATCAAATTGATTGCTTTACTGGAATTAATG
GCGACTTCCGAAGAATATGAGATATTAGCCAGTACGGGGTTTACGGAAACGGTCAACTCGGACGATTTCGAGCGTTTCAA
TAAGGTCTATAAATATCTGGTGAAGAACTTCACGTCTCCAGTGAAGCTGGAGGAAGTCGCCGCTTTGGTAGGCTTGACTC
CGACCGCTTTTTGTCGTTATTTCAAGAAACGGACCAAGAAGACTTTCGTGGAGTACCTGAATGACATGCGCATAGGACAT
GCGAAAAAACTATTGATAGAGGGAAACCTGAAGATATCCACGATTAGTTCCGAGGCCGGATTCAATAATCTATCCAACTT
CATCGGCCAATTTAAGAAAACCACGAATATGCTTCCATCCGAGTACCAGAAAAAATATAAGGAGCGCCTGGATGGAGAAT
AA

Upstream 100 bases:

>100_bases
TGAATAATCCGTTTGTTACCGCCGTACAGGAACATATCGTGAATAAACGGGCGCTTGGGGATGAACTGATCGAGAGGTTG
AAACCTTTAGTATAAAGCCT

Downstream 100 bases:

>100_bases
GGACAGGATTTCATAGTTGTTTGGAAAAATACTAAAATAAAGCCCAAGGTATTCGATCTATTTTTGCGATATAAGTTGTA
TCGTAAAATAGAATATCATG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MKPLFQELPFPIDSHIHFYVEDLPHFIVPWHYHPAIEIMYITSGTGTRFVGDHVEGYFEGDVCMIGPQLPHEWRNDPVYF
DKSSGLRATCICLFFKRQIFEPNLIRLPEMNNIRELIERSRRGIKFVGKSRKKIAELISQSANETGASRVIKLIALLELM
ATSEEYEILASTGFTETVNSDDFERFNKVYKYLVKNFTSPVKLEEVAALVGLTPTAFCRYFKKRTKKTFVEYLNDMRIGH
AKKLLIEGNLKISTISSEAGFNNLSNFIGQFKKTTNMLPSEYQKKYKERLDGE

Sequences:

>Translated_293_residues
MKPLFQELPFPIDSHIHFYVEDLPHFIVPWHYHPAIEIMYITSGTGTRFVGDHVEGYFEGDVCMIGPQLPHEWRNDPVYF
DKSSGLRATCICLFFKRQIFEPNLIRLPEMNNIRELIERSRRGIKFVGKSRKKIAELISQSANETGASRVIKLIALLELM
ATSEEYEILASTGFTETVNSDDFERFNKVYKYLVKNFTSPVKLEEVAALVGLTPTAFCRYFKKRTKKTFVEYLNDMRIGH
AKKLLIEGNLKISTISSEAGFNNLSNFIGQFKKTTNMLPSEYQKKYKERLDGE
>Mature_293_residues
MKPLFQELPFPIDSHIHFYVEDLPHFIVPWHYHPAIEIMYITSGTGTRFVGDHVEGYFEGDVCMIGPQLPHEWRNDPVYF
DKSSGLRATCICLFFKRQIFEPNLIRLPEMNNIRELIERSRRGIKFVGKSRKKIAELISQSANETGASRVIKLIALLELM
ATSEEYEILASTGFTETVNSDDFERFNKVYKYLVKNFTSPVKLEEVAALVGLTPTAFCRYFKKRTKKTFVEYLNDMRIGH
AKKLLIEGNLKISTISSEAGFNNLSNFIGQFKKTTNMLPSEYQKKYKERLDGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=105, Percent_Identity=32.3809523809524, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33889; Mature: 33889

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLFQELPFPIDSHIHFYVEDLPHFIVPWHYHPAIEIMYITSGTGTRFVGDHVEGYFEG
CCCCHHHCCCCCCCCHHHEECCCCCEEECCEECCEEEEEEEECCCCCCCHHHCCCCEECC
DVCMIGPQLPHEWRNDPVYFDKSSGLRATCICLFFKRQIFEPNLIRLPEMNNIRELIERS
CEEEECCCCCHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHH
RRGIKFVGKSRKKIAELISQSANETGASRVIKLIALLELMATSEEYEILASTGFTETVNS
HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
DDFERFNKVYKYLVKNFTSPVKLEEVAALVGLTPTAFCRYFKKRTKKTFVEYLNDMRIGH
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
AKKLLIEGNLKISTISSEAGFNNLSNFIGQFKKTTNMLPSEYQKKYKERLDGE
HHEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MKPLFQELPFPIDSHIHFYVEDLPHFIVPWHYHPAIEIMYITSGTGTRFVGDHVEGYFEG
CCCCHHHCCCCCCCCHHHEECCCCCEEECCEECCEEEEEEEECCCCCCCHHHCCCCEECC
DVCMIGPQLPHEWRNDPVYFDKSSGLRATCICLFFKRQIFEPNLIRLPEMNNIRELIERS
CEEEECCCCCHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHH
RRGIKFVGKSRKKIAELISQSANETGASRVIKLIALLELMATSEEYEILASTGFTETVNS
HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
DDFERFNKVYKYLVKNFTSPVKLEEVAALVGLTPTAFCRYFKKRTKKTFVEYLNDMRIGH
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
AKKLLIEGNLKISTISSEAGFNNLSNFIGQFKKTTNMLPSEYQKKYKERLDGE
HHEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]