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The map label for this gene is ypdB [C]

Identifier: 150009787

GI number: 150009787

Start: 3876769

End: 3877563

Strand: Reverse

Name: ypdB [C]

Synonym: BDI_3203

Alternate gene names: 150009787

Gene position: 3877563-3876769 (Counterclockwise)

Preceding gene: 150009788

Following gene: 150009784

Centisome position: 80.59

GC content: 44.65

Gene sequence:

>795_bases
ATGCAAGAACATCCTATTACAACATCCATATTACATAAAGGGCTGGGAAGCCTATTACTACTTTTAGCCATAGCGATCCA
ATGCGCATTATTAACTCTTTATGGCGATCTTCCGTTGAGCATCACTTTGGTCGATAGCCTACTTTCCATCGCATTGTTCG
CCGTAGCGGGATATTATCTTTGGTATGTACAATGTACGTTACATATCATGCAAGCACGAGTGGCTTTCGCCGTACTCGTA
CAAATCGCTTGCATAGCCGGATGCTCGATCTTGCTACAAATATTCGGATTGGAAGATTGGGAGGAATTCTCGATCACGAT
TCCTTTTCGATTCCTGTTCGGCCTAATGGCATGGATCATTCTATCCCAATGGTATGCCAGTCGGGAAAGAAAGAGTGAGG
CGGAACCTATCGTGAGACAAATGGAGGAAAAGACGGCACCTCCCCCGACTACCGTTCCGGAGGAGATTCTAGATCGTATA
TCCGTAAAAGACGGGGCACGTATTCATATCATCCCGATAAAAGAGATATTCTATTTGCAAGCATGTGGCGACTATGTGAC
CTTATTCACCACTTCCGGTCAGCACGTAAAGGAGCAAACCATGAAGTATTTCGAGCGAAGCCTTCCTTCTCCGGAGTTCG
TTCGTATACACCGCTCTTATATCGTTAATACGGAACAGATATTGCGAGTAGAACTATTCGGAAAAGAAACCTATCAAGTA
CGATTAAAGGATGGAACCTATCTTCGTGCCAGTAGCGCTGGCTATAAGCTACTCAAAGAACGTCTTTCCCTTTAG

Upstream 100 bases:

>100_bases
GATATGAGGGAACTGACAGAAGCAACCGACATGACGCATACACTATACATATGTGGAGACTTGTCGTTCAGCGGCCTTGA
ACTAAGAGACTAAACTCATC

Downstream 100 bases:

>100_bases
CAGTCCTATGAAAGGGATCTAATCATCGTTAAAATTAGAAGATTTTGATTGTAATATATAGAGCTTTATGTTGTGTAACA
CTTTTTAGCAAGCATCGACA

Product: putative transmembrane protein and transcriptional regulator

Products: NA

Alternate protein names: Two Component Transcriptional Regulator Lyttr Family; Response Regulator Receiver Protein; LytTR Family Two Component Transcriptional Regulator; Two Component Transcriptional Regulator LytTR Family; LytR Family Transcriptional Regulator; LytR/AlgR Family Transcriptional Regulator; Two-Component System Response Regulator Protein; Transmembrane And Transcriptional Regulatory Protein

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MQEHPITTSILHKGLGSLLLLLAIAIQCALLTLYGDLPLSITLVDSLLSIALFAVAGYYLWYVQCTLHIMQARVAFAVLV
QIACIAGCSILLQIFGLEDWEEFSITIPFRFLFGLMAWIILSQWYASRERKSEAEPIVRQMEEKTAPPPTTVPEEILDRI
SVKDGARIHIIPIKEIFYLQACGDYVTLFTTSGQHVKEQTMKYFERSLPSPEFVRIHRSYIVNTEQILRVELFGKETYQV
RLKDGTYLRASSAGYKLLKERLSL

Sequences:

>Translated_264_residues
MQEHPITTSILHKGLGSLLLLLAIAIQCALLTLYGDLPLSITLVDSLLSIALFAVAGYYLWYVQCTLHIMQARVAFAVLV
QIACIAGCSILLQIFGLEDWEEFSITIPFRFLFGLMAWIILSQWYASRERKSEAEPIVRQMEEKTAPPPTTVPEEILDRI
SVKDGARIHIIPIKEIFYLQACGDYVTLFTTSGQHVKEQTMKYFERSLPSPEFVRIHRSYIVNTEQILRVELFGKETYQV
RLKDGTYLRASSAGYKLLKERLSL
>Mature_264_residues
MQEHPITTSILHKGLGSLLLLLAIAIQCALLTLYGDLPLSITLVDSLLSIALFAVAGYYLWYVQCTLHIMQARVAFAVLV
QIACIAGCSILLQIFGLEDWEEFSITIPFRFLFGLMAWIILSQWYASRERKSEAEPIVRQMEEKTAPPPTTVPEEILDRI
SVKDGARIHIIPIKEIFYLQACGDYVTLFTTSGQHVKEQTMKYFERSLPSPEFVRIHRSYIVNTEQILRVELFGKETYQV
RLKDGTYLRASSAGYKLLKERLSL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30079; Mature: 30079

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEHPITTSILHKGLGSLLLLLAIAIQCALLTLYGDLPLSITLVDSLLSIALFAVAGYYL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
WYVQCTLHIMQARVAFAVLVQIACIAGCSILLQIFGLEDWEEFSITIPFRFLFGLMAWII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHH
LSQWYASRERKSEAEPIVRQMEEKTAPPPTTVPEEILDRISVKDGARIHIIPIKEIFYLQ
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEHHHHHHHH
ACGDYVTLFTTSGQHVKEQTMKYFERSLPSPEFVRIHRSYIVNTEQILRVELFGKETYQV
HCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHEECCCEEEE
RLKDGTYLRASSAGYKLLKERLSL
EECCCCEEEECHHHHHHHHHHHCC
>Mature Secondary Structure
MQEHPITTSILHKGLGSLLLLLAIAIQCALLTLYGDLPLSITLVDSLLSIALFAVAGYYL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
WYVQCTLHIMQARVAFAVLVQIACIAGCSILLQIFGLEDWEEFSITIPFRFLFGLMAWII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHH
LSQWYASRERKSEAEPIVRQMEEKTAPPPTTVPEEILDRISVKDGARIHIIPIKEIFYLQ
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEHHHHHHHH
ACGDYVTLFTTSGQHVKEQTMKYFERSLPSPEFVRIHRSYIVNTEQILRVELFGKETYQV
HCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHEECCCEEEE
RLKDGTYLRASSAGYKLLKERLSL
EECCCCEEEECHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA