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The map label for this gene is dapE [H]

Identifier: 150009684

GI number: 150009684

Start: 3716228

End: 3717283

Strand: Reverse

Name: dapE [H]

Synonym: BDI_3099

Alternate gene names: 150009684

Gene position: 3717283-3716228 (Counterclockwise)

Preceding gene: 150009685

Following gene: 150009683

Centisome position: 77.26

GC content: 50.38

Gene sequence:

>1056_bases
ATGGAAAGATATTACGAAGCGATTGATTTATTAAAAGGCATGATCTCCCGTCCGTCTTTCAGCCGGGACGAGACCGCCGT
AGCGGATTTCCTGCAAGCAGAATGGCAAAAGGCCGGACAAAAGGTGTTCCGCAAAGGCAACAACCTGTGGATCATCGCCC
CGGATTTCGATTTCGGTAAACCGACCCTTTTACTCAACTCCCATATAGACACCGTCAAGCCCGCTTCCGGTTGGACCAAA
GACCCGTTCACTCCCGAAGAGACCGAGGATGATCAATTATATGGACTGGGCAGTAACGATGCCGGGGCGAGCGTAGTCTC
CCTCTATGAAACCTTCTGTATCTTAAGCGAGAAAGAACAACCTTATAATCTAATCTTCCTTGCGTCTTGTGAGGAAGAGG
TATCCGGGAAGAATGGCATTGAAAGCGCATTGGCCGAGCTTCCTCCTATCTCCTTCGCTGTCGTAGGTGAACCTACGGGT
ATGCAACCCGCCGTAGCCGAGAAAGGGCTAATGGTACTGGATTGCACCGCTATCGGAAAGGCCGGACATGCCGCACGTAA
TGAGGGCATCAATGCCATCACTTTAGCGATGAAGGATATAGAATGGTTCAGCACCTATCAATTCCCGGAGAAAAGCGACT
TCCTCGGACCGGTGAAAATGACTGTCACCATCATCCATGCCGGTACACAACACAATGTCGTTCCCGATAAATGCGAATTC
ACGGTAGATATCCGCACCAACGAATTTTATACGAACGAACAGTTATTCGAGCTAATCAAGGAAAAGGTTCATTGCGAGAT
CAAGGCCCGCAGCTTCCGCCTTAGCTCCACCCGCACGGATCTGGATCATCCTTTTGTGCGACGGGCGATCTTAATGGGAA
AAGAGCCTTTCGGCTCTCCTACGCTTAGCGACCAAGCCTTGATGCGTTTCCCCTCCGTAAAGATAGGGCCGGGAAACTCG
GCACGTTCCCATTCCGCAGACGAATACATCAAGGGACCGGAGATCCGGGAAGCGATCGATACCTATGTAAGGTTACTGAA
TGGATTACAACTATAG

Upstream 100 bases:

>100_bases
TTCGTTCAATACGTACGCGGAGACATCAAATTCGATTCCTTAGAAGAATTGAAAGCCCAACTGGAGAAAGACAGATGCAC
CGTAAATAATTTATTATAAT

Downstream 100 bases:

>100_bases
CTTATGTTAAAAAAGATACTGGGGACAATAGGCTCGCGTTATCTGATAGCTTTCCTTAACCTAGCGCTGATCTTCATTAA
TGCGAAGGTGCTGGGAATCG

Product: acetylornithine deacetylase

Products: NA

Alternate protein names: SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase [H]

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MERYYEAIDLLKGMISRPSFSRDETAVADFLQAEWQKAGQKVFRKGNNLWIIAPDFDFGKPTLLLNSHIDTVKPASGWTK
DPFTPEETEDDQLYGLGSNDAGASVVSLYETFCILSEKEQPYNLIFLASCEEEVSGKNGIESALAELPPISFAVVGEPTG
MQPAVAEKGLMVLDCTAIGKAGHAARNEGINAITLAMKDIEWFSTYQFPEKSDFLGPVKMTVTIIHAGTQHNVVPDKCEF
TVDIRTNEFYTNEQLFELIKEKVHCEIKARSFRLSSTRTDLDHPFVRRAILMGKEPFGSPTLSDQALMRFPSVKIGPGNS
ARSHSADEYIKGPEIREAIDTYVRLLNGLQL

Sequences:

>Translated_351_residues
MERYYEAIDLLKGMISRPSFSRDETAVADFLQAEWQKAGQKVFRKGNNLWIIAPDFDFGKPTLLLNSHIDTVKPASGWTK
DPFTPEETEDDQLYGLGSNDAGASVVSLYETFCILSEKEQPYNLIFLASCEEEVSGKNGIESALAELPPISFAVVGEPTG
MQPAVAEKGLMVLDCTAIGKAGHAARNEGINAITLAMKDIEWFSTYQFPEKSDFLGPVKMTVTIIHAGTQHNVVPDKCEF
TVDIRTNEFYTNEQLFELIKEKVHCEIKARSFRLSSTRTDLDHPFVRRAILMGKEPFGSPTLSDQALMRFPSVKIGPGNS
ARSHSADEYIKGPEIREAIDTYVRLLNGLQL
>Mature_351_residues
MERYYEAIDLLKGMISRPSFSRDETAVADFLQAEWQKAGQKVFRKGNNLWIIAPDFDFGKPTLLLNSHIDTVKPASGWTK
DPFTPEETEDDQLYGLGSNDAGASVVSLYETFCILSEKEQPYNLIFLASCEEEVSGKNGIESALAELPPISFAVVGEPTG
MQPAVAEKGLMVLDCTAIGKAGHAARNEGINAITLAMKDIEWFSTYQFPEKSDFLGPVKMTVTIIHAGTQHNVVPDKCEF
TVDIRTNEFYTNEQLFELIKEKVHCEIKARSFRLSSTRTDLDHPFVRRAILMGKEPFGSPTLSDQALMRFPSVKIGPGNS
ARSHSADEYIKGPEIREAIDTYVRLLNGLQL

Specific function: Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bact

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family. DapE subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790395, Length=368, Percent_Identity=26.9021739130435, Blast_Score=79, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17551016, Length=356, Percent_Identity=24.1573033707865, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005941
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.18 [H]

Molecular weight: Translated: 39052; Mature: 39052

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERYYEAIDLLKGMISRPSFSRDETAVADFLQAEWQKAGQKVFRKGNNLWIIAPDFDFGK
CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
PTLLLNSHIDTVKPASGWTKDPFTPEETEDDQLYGLGSNDAGASVVSLYETFCILSEKEQ
CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCC
PYNLIFLASCEEEVSGKNGIESALAELPPISFAVVGEPTGMQPAVAEKGLMVLDCTAIGK
CEEEEEEEECCHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHCCEEEEEEECCCC
AGHAARNEGINAITLAMKDIEWFSTYQFPEKSDFLGPVKMTVTIIHAGTQHNVVPDKCEF
CCCHHHHCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEE
TVDIRTNEFYTNEQLFELIKEKVHCEIKARSFRLSSTRTDLDHPFVRRAILMGKEPFGSP
EEEEECCCEECHHHHHHHHHHHHCEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC
TLSDQALMRFPSVKIGPGNSARSHSADEYIKGPEIREAIDTYVRLLNGLQL
CCCCHHHHHCCCEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MERYYEAIDLLKGMISRPSFSRDETAVADFLQAEWQKAGQKVFRKGNNLWIIAPDFDFGK
CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
PTLLLNSHIDTVKPASGWTKDPFTPEETEDDQLYGLGSNDAGASVVSLYETFCILSEKEQ
CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCC
PYNLIFLASCEEEVSGKNGIESALAELPPISFAVVGEPTGMQPAVAEKGLMVLDCTAIGK
CEEEEEEEECCHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHCCEEEEEEECCCC
AGHAARNEGINAITLAMKDIEWFSTYQFPEKSDFLGPVKMTVTIIHAGTQHNVVPDKCEF
CCCHHHHCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEE
TVDIRTNEFYTNEQLFELIKEKVHCEIKARSFRLSSTRTDLDHPFVRRAILMGKEPFGSP
EEEEECCCEECHHHHHHHHHHHHCEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC
TLSDQALMRFPSVKIGPGNSARSHSADEYIKGPEIREAIDTYVRLLNGLQL
CCCCHHHHHCCCEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA