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The map label for this gene is 150009548

Identifier: 150009548

GI number: 150009548

Start: 3544277

End: 3544705

Strand: Direct

Name: 150009548

Synonym: BDI_2961

Alternate gene names: NA

Gene position: 3544277-3544705 (Clockwise)

Preceding gene: 150009547

Following gene: 150009549

Centisome position: 73.66

GC content: 50.82

Gene sequence:

>429_bases
ATGGCAATAGCATATTACGCCGAGGATATCCAGCTCCCGGCAATCAAGAAAAAAGCGGTCAGCGGATGGATCAAGGCGGT
AGCCGAGACCTACGGGAAGAAGACAGGCGATATCAGTTACATCTTCTGCTCGGACGAGAAGATCTTGGAGGTAAACCGCC
AATATCTCCAACACGATTATTACACGGATATCATCACCTTTGATTATACGGAAGGAAATAAGATCTCGGGTGACCTGTTC
ATCAGCCTCGATACGGTCAGGACAAACGCCGAGACATTCCACACGGATTATAACGAGGAACTCCACCGTACCATCATCCA
CGGCATCCTGCACCTTTGCGGTATCAACGACAAAGGCCCCGGCGAGCGGGAGATCATGGAGGAGAACGAGAACAGAGCGT
TAGCGATCTTGCCGGAGGAATGTCGGTAA

Upstream 100 bases:

>100_bases
GTTCTTTTAACATTCTATACAATCAATAGATTTGAAATGAATCTATTTAAAATCTATTGATTACATTTGTAACGAAATTT
CAATACGATAAATAGACCTT

Downstream 100 bases:

>100_bases
AGAGATGTTAACCAGAAACAAATTTATACTACAAATCTTATCTGAAGAAAATTATGGAGAAAATCACAGTCCAAAATACA
AGTGTCATGATCATATCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MAIAYYAEDIQLPAIKKKAVSGWIKAVAETYGKKTGDISYIFCSDEKILEVNRQYLQHDYYTDIITFDYTEGNKISGDLF
ISLDTVRTNAETFHTDYNEELHRTIIHGILHLCGINDKGPGEREIMEENENRALAILPEECR

Sequences:

>Translated_142_residues
MAIAYYAEDIQLPAIKKKAVSGWIKAVAETYGKKTGDISYIFCSDEKILEVNRQYLQHDYYTDIITFDYTEGNKISGDLF
ISLDTVRTNAETFHTDYNEELHRTIIHGILHLCGINDKGPGEREIMEENENRALAILPEECR
>Mature_141_residues
AIAYYAEDIQLPAIKKKAVSGWIKAVAETYGKKTGDISYIFCSDEKILEVNRQYLQHDYYTDIITFDYTEGNKISGDLFI
SLDTVRTNAETFHTDYNEELHRTIIHGILHLCGINDKGPGEREIMEENENRALAILPEECR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PARD8 (A6LG55)

Other databases:

- EMBL:   CP000140
- RefSeq:   YP_001304291.1
- ProteinModelPortal:   A6LG55
- SMR:   A6LG55
- STRING:   A6LG55
- GeneID:   5308110
- GenomeReviews:   CP000140_GR
- KEGG:   pdi:BDI_2961
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   VIIHGIL
- ProtClustDB:   CLSK913607
- BioCyc:   PDIS435591:BDI_2961-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16295; Mature: 16163

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIAYYAEDIQLPAIKKKAVSGWIKAVAETYGKKTGDISYIFCSDEKILEVNRQYLQHDY
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCC
YTDIITFDYTEGNKISGDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCGINDKGP
CCEEEEEECCCCCEECCEEEEEEECEECCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
GEREIMEENENRALAILPEECR
CHHHHHHCCCCCEEEEECCCCC
>Mature Secondary Structure 
AIAYYAEDIQLPAIKKKAVSGWIKAVAETYGKKTGDISYIFCSDEKILEVNRQYLQHDY
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCC
YTDIITFDYTEGNKISGDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCGINDKGP
CCEEEEEECCCCCEECCEEEEEEECEECCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
GEREIMEENENRALAILPEECR
CHHHHHHCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA