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The map label for this gene is ydeM [C]

Identifier: 150009523

GI number: 150009523

Start: 3511448

End: 3512761

Strand: Direct

Name: ydeM [C]

Synonym: BDI_2936

Alternate gene names: 150009523

Gene position: 3511448-3512761 (Clockwise)

Preceding gene: 150009522

Following gene: 150009524

Centisome position: 72.98

GC content: 30.75

Gene sequence:

>1314_bases
ATGAAAATATCAATGTACACATTCCTATTTGAGATAGACAGTAAATTTTATGCATATAATACATTGTCTAATGCCTTGAT
CGAAATAGCAGAGGATACATATAAGATTTTATTAGTCAACAAGAATAGACATACACCTTTACAAGAGAAAGACTTGGGAT
GTGATGAACTTTATCAAACTTTGAAAGAAAACCATATGATCACTGAAAATGATCGGGATGAGTTCTTACTGTATAAAAGT
ATTATCCTAGCAGGACGCTCCATCAATATCTTAAATCTAACGATAGCTCCAACCATGGATTGCAATTACTCGTGTTCTTA
CTGTTTTGAAAATTGCAAACGTAATATTTATATGACAGAAAAGGTCATAAGCTCAATTATTAAATTCATAGAACAATATG
AAAACATTAAAAATATTCACGTAGTTTGGTTTGGAGGAGAACCTCTTCTAGGCATTAAGCAAATAGAATCACTTTATCGT
AAGATGATTCTGATTCCCGATAAAAATTATTCTTTCTCAATAATCTCTAATGGGTTCTTGATATCACCGGATATTATAAA
ACTCTTTAAGGAGATGAAGTTACAACACATACAAATTACGCTAGATGGATTAAAAGAGACTCACAACAAGATAAAATTCA
CAAAAAATGAAAACGATACTTTTTCTAGAACTATAAAGAATATAGACTTGCTAGCATCTTCTGCCCCAGAAATACGAATT
AGTATACGAGTAAATATGAATAAAGAGAATTCTTCTGAATTTATAACTTTATATTCTTTCATATTACAACGATATAAGAG
CAACCCATTGATTGGAATTTATCCTGCTTTTATAACATCTACTTCTTCTAAATCAAGTTCTTCTTGTTCTTTACTTTTCA
ATAGACAAGAGAAATCTGAGTTTATACAACAGCTCTACTATGACAGAGGTATCGTAACCAATTTATGTGGATATCCAGAT
TCCTCTTTTACAGAATGTTCTATTCGAAATAAACACACATTTACAATAGATCCAGAAGGATACTTATATAAATGTTGGGA
AATTATAGGCGATCAAAAATATGCCATAGCAAAATTGGATTCAGAAGGAACTATTCAATCCATAGATCAGAAAATTCTTA
ACCGATACCTCTATGCCGCAGATCCACTGGAAGATAAAACATGTTCTAAATGTCCTTATCTTCCTATTTGTTTTGGAGGT
TGCCCCCATAAACGGATAGAAAATATATTTAAAGATAAACATTATGATACATGTACATACCTTAAGGGTTCTCTCAAAGA
ATTTATAAAAATTCATTTGTCACAAAATAGCTGA

Upstream 100 bases:

>100_bases
ATCAGGAGCTCACGGCCTTGCGGGGGACTTATTATAAGTTGGTGAAGAACCAGTTGGAGTTGGGGAATTAATCACTTAAC
AATCTAAATATGCAAATACC

Downstream 100 bases:

>100_bases
ATAAGATTATAATAAAAAGGCTATTTATTTAAAAACTTAATATCATTGCGTTATGAAAAATTTTAAAGTGATTGAAAAAA
GCCGTCTAAATGAATTTACA

Product: arylsulfatase regulator

Products: NA

Alternate protein names: AnSME; Cys-type sulfatase-activating enzyme [H]

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MKISMYTFLFEIDSKFYAYNTLSNALIEIAEDTYKILLVNKNRHTPLQEKDLGCDELYQTLKENHMITENDRDEFLLYKS
IILAGRSINILNLTIAPTMDCNYSCSYCFENCKRNIYMTEKVISSIIKFIEQYENIKNIHVVWFGGEPLLGIKQIESLYR
KMILIPDKNYSFSIISNGFLISPDIIKLFKEMKLQHIQITLDGLKETHNKIKFTKNENDTFSRTIKNIDLLASSAPEIRI
SIRVNMNKENSSEFITLYSFILQRYKSNPLIGIYPAFITSTSSKSSSSCSLLFNRQEKSEFIQQLYYDRGIVTNLCGYPD
SSFTECSIRNKHTFTIDPEGYLYKCWEIIGDQKYAIAKLDSEGTIQSIDQKILNRYLYAADPLEDKTCSKCPYLPICFGG
CPHKRIENIFKDKHYDTCTYLKGSLKEFIKIHLSQNS

Sequences:

>Translated_437_residues
MKISMYTFLFEIDSKFYAYNTLSNALIEIAEDTYKILLVNKNRHTPLQEKDLGCDELYQTLKENHMITENDRDEFLLYKS
IILAGRSINILNLTIAPTMDCNYSCSYCFENCKRNIYMTEKVISSIIKFIEQYENIKNIHVVWFGGEPLLGIKQIESLYR
KMILIPDKNYSFSIISNGFLISPDIIKLFKEMKLQHIQITLDGLKETHNKIKFTKNENDTFSRTIKNIDLLASSAPEIRI
SIRVNMNKENSSEFITLYSFILQRYKSNPLIGIYPAFITSTSSKSSSSCSLLFNRQEKSEFIQQLYYDRGIVTNLCGYPD
SSFTECSIRNKHTFTIDPEGYLYKCWEIIGDQKYAIAKLDSEGTIQSIDQKILNRYLYAADPLEDKTCSKCPYLPICFGG
CPHKRIENIFKDKHYDTCTYLKGSLKEFIKIHLSQNS
>Mature_437_residues
MKISMYTFLFEIDSKFYAYNTLSNALIEIAEDTYKILLVNKNRHTPLQEKDLGCDELYQTLKENHMITENDRDEFLLYKS
IILAGRSINILNLTIAPTMDCNYSCSYCFENCKRNIYMTEKVISSIIKFIEQYENIKNIHVVWFGGEPLLGIKQIESLYR
KMILIPDKNYSFSIISNGFLISPDIIKLFKEMKLQHIQITLDGLKETHNKIKFTKNENDTFSRTIKNIDLLASSAPEIRI
SIRVNMNKENSSEFITLYSFILQRYKSNPLIGIYPAFITSTSSKSSSSCSLLFNRQEKSEFIQQLYYDRGIVTNLCGYPD
SSFTECSIRNKHTFTIDPEGYLYKCWEIIGDQKYAIAKLDSEGTIQSIDQKILNRYLYAADPLEDKTCSKCPYLPICFGG
CPHKRIENIFKDKHYDTCTYLKGSLKEFIKIHLSQNS

Specific function: Involved in 'Cys-type' sulfatase maturation under anaerobic conditions. Catalyzes the post-translational modification of cysteine into 3-oxoalanine (also known as C(alpha)-formylglycine (FGly)), by a free radical chemical mechanism initiated via the reduc

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 50758; Mature: 50758

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISMYTFLFEIDSKFYAYNTLSNALIEIAEDTYKILLVNKNRHTPLQEKDLGCDELYQT
CEEEEEEEEEEECCCEEEHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHH
LKENHMITENDRDEFLLYKSIILAGRSINILNLTIAPTMDCNYSCSYCFENCKRNIYMTE
HHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEHH
KVISSIIKFIEQYENIKNIHVVWFGGEPLLGIKQIESLYRKMILIPDKNYSFSIISNGFL
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCEEEECCCCCEEEEEECCEE
ISPDIIKLFKEMKLQHIQITLDGLKETHNKIKFTKNENDTFSRTIKNIDLLASSAPEIRI
ECHHHHHHHHHCCCEEEEEEEHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCCCEEE
SIRVNMNKENSSEFITLYSFILQRYKSNPLIGIYPAFITSTSSKSSSSCSLLFNRQEKSE
EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHEECCCCCCCCCEEEEECCHHHHH
FIQQLYYDRGIVTNLCGYPDSSFTECSIRNKHTFTIDPEGYLYKCWEIIGDQKYAIAKLD
HHHHHHHCCCCHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEC
SEGTIQSIDQKILNRYLYAADPLEDKTCSKCPYLPICFGGCPHKRIENIFKDKHYDTCTY
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCHHHH
LKGSLKEFIKIHLSQNS
HHHHHHHHHEEEECCCC
>Mature Secondary Structure
MKISMYTFLFEIDSKFYAYNTLSNALIEIAEDTYKILLVNKNRHTPLQEKDLGCDELYQT
CEEEEEEEEEEECCCEEEHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHH
LKENHMITENDRDEFLLYKSIILAGRSINILNLTIAPTMDCNYSCSYCFENCKRNIYMTE
HHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEHH
KVISSIIKFIEQYENIKNIHVVWFGGEPLLGIKQIESLYRKMILIPDKNYSFSIISNGFL
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCEEEECCCCCEEEEEECCEE
ISPDIIKLFKEMKLQHIQITLDGLKETHNKIKFTKNENDTFSRTIKNIDLLASSAPEIRI
ECHHHHHHHHHCCCEEEEEEEHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCCCEEE
SIRVNMNKENSSEFITLYSFILQRYKSNPLIGIYPAFITSTSSKSSSSCSLLFNRQEKSE
EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHEECCCCCCCCCEEEEECCHHHHH
FIQQLYYDRGIVTNLCGYPDSSFTECSIRNKHTFTIDPEGYLYKCWEIIGDQKYAIAKLD
HHHHHHHCCCCHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEC
SEGTIQSIDQKILNRYLYAADPLEDKTCSKCPYLPICFGGCPHKRIENIFKDKHYDTCTY
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCHHHH
LKGSLKEFIKIHLSQNS
HHHHHHHHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA