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The map label for this gene is fecI [C]

Identifier: 150009448

GI number: 150009448

Start: 3407710

End: 3408273

Strand: Direct

Name: fecI [C]

Synonym: BDI_2856

Alternate gene names: 150009448

Gene position: 3407710-3408273 (Clockwise)

Preceding gene: 150009446

Following gene: 150009449

Centisome position: 70.83

GC content: 39.72

Gene sequence:

>564_bases
TTGGAAAAACACTCCAAAGAAATAATGCAATGGGTCTGTGAAATCGCACTATCCGATTCTCAAACTGCTTTTAAATCGCT
TTATTTAGCCTATTTTCAGAGGCTAATGCGGTTTACATCCCTTTATGTGCCTTCCTCTGTAGAAGCTGAGGAAATTGTCT
CTGATACATTTCTAAGTCTTTGGAATAATAGAAAGTCATTACCGGAGATCTCTAACTTCGATTCTTATATCTATGGCATA
GCCCGCCACAAAGCCATCAGCCTATACCGGACACAACATATGGAGAAAGTCCAGATCGATGAGAATACGATCGATTTATT
CGCACATACCGATACTACGCCCGAGGAAGAACTTATTTCTAAAGAATGCATCGATCATTTAAATGAGGCGATCAATACGC
TCCCGGATAAATGCAAGATGGCTTTTAAACTGATCCGTGAAGATAAGATGAAATATAAGGATGCGGCAAATATCCTAGAA
ATATCAGTAAAGACATTAGAAGCCCACATCGCCACGGCAGTACGGAAACTACGGGAATCTCTAGCTAAAGAAATAAACGA
CTAA

Upstream 100 bases:

>100_bases
TCAAGTATTTCTCTTTTAAGAGAGAGATCCACTAAGGGTTTTTATATACATTTGCGACTATATATTTAGAAGGGAAATAA
GTTAACAAGATTCTAGTTAC

Downstream 100 bases:

>100_bases
TCTATCCACGTTCCCTCTTTGTAAAGACGTAGCGTGCCACATCTCTACAACGGCTGGTGTATATACCAAAAAAAGGAGCC
AATCTTTCGACTGACTCCTC

Product: putative ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; Transcriptional Regulator LuxR Family; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; RNA Polymerase Sigma-H Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; Sigma-70 Region 2 Subfamily; ECF-Type RNA Polymerase; ECF Sigma Factor; RNA Polymerase Sigma-W Factor; RNA Polymerase ECF Sigma Factor; ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MEKHSKEIMQWVCEIALSDSQTAFKSLYLAYFQRLMRFTSLYVPSSVEAEEIVSDTFLSLWNNRKSLPEISNFDSYIYGI
ARHKAISLYRTQHMEKVQIDENTIDLFAHTDTTPEEELISKECIDHLNEAINTLPDKCKMAFKLIREDKMKYKDAANILE
ISVKTLEAHIATAVRKLRESLAKEIND

Sequences:

>Translated_187_residues
MEKHSKEIMQWVCEIALSDSQTAFKSLYLAYFQRLMRFTSLYVPSSVEAEEIVSDTFLSLWNNRKSLPEISNFDSYIYGI
ARHKAISLYRTQHMEKVQIDENTIDLFAHTDTTPEEELISKECIDHLNEAINTLPDKCKMAFKLIREDKMKYKDAANILE
ISVKTLEAHIATAVRKLRESLAKEIND
>Mature_187_residues
MEKHSKEIMQWVCEIALSDSQTAFKSLYLAYFQRLMRFTSLYVPSSVEAEEIVSDTFLSLWNNRKSLPEISNFDSYIYGI
ARHKAISLYRTQHMEKVQIDENTIDLFAHTDTTPEEELISKECIDHLNEAINTLPDKCKMAFKLIREDKMKYKDAANILE
ISVKTLEAHIATAVRKLRESLAKEIND

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21727; Mature: 21727

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKHSKEIMQWVCEIALSDSQTAFKSLYLAYFQRLMRFTSLYVPSSVEAEEIVSDTFLSL
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
WNNRKSLPEISNFDSYIYGIARHKAISLYRTQHMEKVQIDENTIDLFAHTDTTPEEELIS
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHH
KECIDHLNEAINTLPDKCKMAFKLIREDKMKYKDAANILEISVKTLEAHIATAVRKLRES
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAKEIND
HHHHCCC
>Mature Secondary Structure
MEKHSKEIMQWVCEIALSDSQTAFKSLYLAYFQRLMRFTSLYVPSSVEAEEIVSDTFLSL
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
WNNRKSLPEISNFDSYIYGIARHKAISLYRTQHMEKVQIDENTIDLFAHTDTTPEEELIS
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHH
KECIDHLNEAINTLPDKCKMAFKLIREDKMKYKDAANILEISVKTLEAHIATAVRKLRES
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAKEIND
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA