Click here to switch to the map view.

The map label for this gene is irpA [H]

Identifier: 150009201

GI number: 150009201

Start: 3080008

End: 3081219

Strand: Reverse

Name: irpA [H]

Synonym: BDI_2603

Alternate gene names: 150009201

Gene position: 3081219-3080008 (Counterclockwise)

Preceding gene: 150009202

Following gene: 150009200

Centisome position: 64.04

GC content: 44.64

Gene sequence:

>1212_bases
ATGAAAAAAGTACTTTTATTACCCATGATGTTGATGGGTGTGGCTTTGAGCTTCACTTCTTGTGGAGACAACGATGATCC
GGGCAAGGACCCCGATGTTGTAACTTATGACTTTAAGAATCTTCCTGCGGATTCGGGTGCAAAACCAACAGAAGATCAGA
TGAGTGCGGTTGTCGCTACTTTCGTTGATGAGGTAGCTTTGCCTACCTATAAGGATATGTTGACAAAGATGACTGCCTAT
AAAAATGCGGTAGACAAGTTCATCGCGTCTGGTTCTAAGAATGATTTAGCGGATGCCTGCGACGCTTGGCGTGCGGTTCG
TGTACCTTGGGAACAAAGTGAGGCATTCTTGTTCGGTGTGGCGGATTTGGCACAGCTCGACCCGAGCTTGGATAGCTGGC
CTTTGGATAAGAACGGTATAGAGGAGATTATAGCTACAGGAGAATTCAGCAAGATTTCAGGAGCTGTAGACGAAGACGCG
GAAGATGGTCCTCAAAATTTACGTGGATTCCATACGGCGGAAAAGATGTTATTCTTAGACGGCGAGCCTCGTGATCTGGA
AACAAGCCCGTTCGCAAAGAATGAATTGGAGTATTTGAAGTTAGTGTCCGAACGTATGTTATCTGATACTCAAGACTTAT
ACAATGGTTGGTTGAAAGGCTTAGGAACTTCGGATGTTCCTTCTTCTTATGCGGAGGCTATGAAGAAACATGACGGTTCT
GCCTATTCCATTGGTAATGTTTATCAGGCGATTGAGCTTATGCTGAATGGAAATAATGGTATGGCCGGAATCTCCAATGA
AGTAGGTTCCGCTAAGATAACTGACCCGGTGACCGCATGGAATGGAAGTAATAAAGACGCTACTGACCCGAATAACCCCG
GTGTCTTGGCTGTAGAGTCTTGGTATAGCTGGAATTCCTTGGACGACTATAAGAACAATATCGTAAGTATCAAGAACGCT
TATTTCGGCGGTCGTGATTTGGATGAGGAATCCGCTTCCGAGAGTAGCTTGCATGCGTTGACTAAAATGATTAATCCTAC
GTTGGATAGTTTGATGGTAGTTCAAATTGATAAGACAATCGACGCTATCAATGCGATCGGCTATCCTTTCCGTAACAATC
TAGGGGATACGGAGCATATCAATACGGCTACAGAAGCTTGCGCTGATTTAACGACAGGTTTGGGCGTTGTTAAGTCTAAG
TTCACGAACTAA

Upstream 100 bases:

>100_bases
GGGTGATTATAATAGCCAGAATATGGTTTCTGTCGGTATCGCTTATATCGGCTGGTTCTTATCAAGATAATAGACTATTA
ACAAATATATATGTAAGAAT

Downstream 100 bases:

>100_bases
TCGGACAAGCCGATACGATGAAACGAAGATTACTTCTATTATTCGCTTTATCCGGTAGTCTGCTGTGTAGTTGCGAATCC
GAGGACTTGGAAAATTGGCA

Product: putative iron-regulated protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MKKVLLLPMMLMGVALSFTSCGDNDDPGKDPDVVTYDFKNLPADSGAKPTEDQMSAVVATFVDEVALPTYKDMLTKMTAY
KNAVDKFIASGSKNDLADACDAWRAVRVPWEQSEAFLFGVADLAQLDPSLDSWPLDKNGIEEIIATGEFSKISGAVDEDA
EDGPQNLRGFHTAEKMLFLDGEPRDLETSPFAKNELEYLKLVSERMLSDTQDLYNGWLKGLGTSDVPSSYAEAMKKHDGS
AYSIGNVYQAIELMLNGNNGMAGISNEVGSAKITDPVTAWNGSNKDATDPNNPGVLAVESWYSWNSLDDYKNNIVSIKNA
YFGGRDLDEESASESSLHALTKMINPTLDSLMVVQIDKTIDAINAIGYPFRNNLGDTEHINTATEACADLTTGLGVVKSK
FTN

Sequences:

>Translated_403_residues
MKKVLLLPMMLMGVALSFTSCGDNDDPGKDPDVVTYDFKNLPADSGAKPTEDQMSAVVATFVDEVALPTYKDMLTKMTAY
KNAVDKFIASGSKNDLADACDAWRAVRVPWEQSEAFLFGVADLAQLDPSLDSWPLDKNGIEEIIATGEFSKISGAVDEDA
EDGPQNLRGFHTAEKMLFLDGEPRDLETSPFAKNELEYLKLVSERMLSDTQDLYNGWLKGLGTSDVPSSYAEAMKKHDGS
AYSIGNVYQAIELMLNGNNGMAGISNEVGSAKITDPVTAWNGSNKDATDPNNPGVLAVESWYSWNSLDDYKNNIVSIKNA
YFGGRDLDEESASESSLHALTKMINPTLDSLMVVQIDKTIDAINAIGYPFRNNLGDTEHINTATEACADLTTGLGVVKSK
FTN
>Mature_403_residues
MKKVLLLPMMLMGVALSFTSCGDNDDPGKDPDVVTYDFKNLPADSGAKPTEDQMSAVVATFVDEVALPTYKDMLTKMTAY
KNAVDKFIASGSKNDLADACDAWRAVRVPWEQSEAFLFGVADLAQLDPSLDSWPLDKNGIEEIIATGEFSKISGAVDEDA
EDGPQNLRGFHTAEKMLFLDGEPRDLETSPFAKNELEYLKLVSERMLSDTQDLYNGWLKGLGTSDVPSSYAEAMKKHDGS
AYSIGNVYQAIELMLNGNNGMAGISNEVGSAKITDPVTAWNGSNKDATDPNNPGVLAVESWYSWNSLDDYKNNIVSIKNA
YFGGRDLDEESASESSLHALTKMINPTLDSLMVVQIDKTIDAINAIGYPFRNNLGDTEHINTATEACADLTTGLGVVKSK
FTN

Specific function: IrpA occurs under iron-deficient growth conditions in cyanobacterium Synechococcus and disappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage [H]

COG id: COG3487

COG function: function code P; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cell inner membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 43784; Mature: 43784

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLLLPMMLMGVALSFTSCGDNDDPGKDPDVVTYDFKNLPADSGAKPTEDQMSAVVAT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
FVDEVALPTYKDMLTKMTAYKNAVDKFIASGSKNDLADACDAWRAVRVPWEQSEAFLFGV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCCCCEEEEEH
ADLAQLDPSLDSWPLDKNGIEEIIATGEFSKISGAVDEDAEDGPQNLRGFHTAEKMLFLD
HHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEC
GEPRDLETSPFAKNELEYLKLVSERMLSDTQDLYNGWLKGLGTSDVPSSYAEAMKKHDGS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
AYSIGNVYQAIELMLNGNNGMAGISNEVGSAKITDPVTAWNGSNKDATDPNNPGVLAVES
EEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
WYSWNSLDDYKNNIVSIKNAYFGGRDLDEESASESSLHALTKMINPTLDSLMVVQIDKTI
CCCCCCHHHHHHCEEEEHHCCCCCCCCCHHHCHHHHHHHHHHHHCHHHHCEEEEEEHHHH
DAINAIGYPFRNNLGDTEHINTATEACADLTTGLGVVKSKFTN
HHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKVLLLPMMLMGVALSFTSCGDNDDPGKDPDVVTYDFKNLPADSGAKPTEDQMSAVVAT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
FVDEVALPTYKDMLTKMTAYKNAVDKFIASGSKNDLADACDAWRAVRVPWEQSEAFLFGV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCCCCEEEEEH
ADLAQLDPSLDSWPLDKNGIEEIIATGEFSKISGAVDEDAEDGPQNLRGFHTAEKMLFLD
HHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEC
GEPRDLETSPFAKNELEYLKLVSERMLSDTQDLYNGWLKGLGTSDVPSSYAEAMKKHDGS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
AYSIGNVYQAIELMLNGNNGMAGISNEVGSAKITDPVTAWNGSNKDATDPNNPGVLAVES
EEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
WYSWNSLDDYKNNIVSIKNAYFGGRDLDEESASESSLHALTKMINPTLDSLMVVQIDKTI
CCCCCCHHHHHHCEEEEHHCCCCCCCCCHHHCHHHHHHHHHHHHCHHHHCEEEEEEHHHH
DAINAIGYPFRNNLGDTEHINTATEACADLTTGLGVVKSKFTN
HHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3139627 [H]