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The map label for this gene is lytT [H]

Identifier: 150009152

GI number: 150009152

Start: 3026140

End: 3026895

Strand: Reverse

Name: lytT [H]

Synonym: BDI_2554

Alternate gene names: 150009152

Gene position: 3026895-3026140 (Counterclockwise)

Preceding gene: 150009153

Following gene: 150009151

Centisome position: 62.91

GC content: 38.23

Gene sequence:

>756_bases
ATGAGAATACTGATCGTAGAGGACGAGACCGCCGCCTATGAGAACTTAGCGGATATGTTGGTTACAATAGATCCCACGCT
TGAGATCATGGGAAATACGGAGAGTGTCCAGCAAACGGTACGTTGGCTGCAAGCCAATCCGAGGCCGGATTTGATTTTTA
TGGATATTCATTTATCGGACGGTTCCGCTTTCGCTATTTTTGACCAGATAGAGGTGGAGGCACCGATTATCTTTACTACG
GCGTACGATCAATATGCGATCGACGCTTTCAAAGTAAACAGCATAGACTATATCTTGAAGCCGATTAAGTCGGAAGAATT
GAAAAGGGCCTTAGATAAGTTTAGCCGATGGAATCATCAAGATATCATCCATTATTTATCCCAATTAACACAGTTGTCTA
CTACTCCTAAATACAAGGATAAACTACTGATTCCTATTAAGGATAAATTGTTGCCTATTAGCTTGAAAGATGTGTCTTGT
TTCTATACGGCTGATAAGAATACATATGTTTATTTAAAGAGTGGTAATTCGTATCCATATGCTAAAACATTGGAACAGAT
AATTTCTTCTTTAAGTCCTGCTGATTTTATTCGTGCGAATAAACAATTCATCATTTCTCGTGATAGCGTGAAGGACATAA
CAATTTGGTTTGATAGCCGTTTGCTCGTTACTTTGGATATAGAAGTGCCTGAGCGTATATATATTAGTAAAAATAAAGCA
TCCGAGTTTAAGTCTTGGATAGTAAGTCTGGAATAA

Upstream 100 bases:

>100_bases
GAATCTGGAGAATCGTTTCTTGCTATTAATGAATAAACAAATACGGGTAGAATCTGATGAGGATGAGTTTCAGGTATACC
TACCCCTAAAATGATGCTAT

Downstream 100 bases:

>100_bases
TAATTAAATAGAAATGCCGGTTCTCTTAAAGCCGGTATTTTTTTGCCCTTTTCGTGTTCAATCCCCATTTTTTCCTTTTC
GTCAACAATCGGAAACTTCC

Product: putative two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MRILIVEDETAAYENLADMLVTIDPTLEIMGNTESVQQTVRWLQANPRPDLIFMDIHLSDGSAFAIFDQIEVEAPIIFTT
AYDQYAIDAFKVNSIDYILKPIKSEELKRALDKFSRWNHQDIIHYLSQLTQLSTTPKYKDKLLIPIKDKLLPISLKDVSC
FYTADKNTYVYLKSGNSYPYAKTLEQIISSLSPADFIRANKQFIISRDSVKDITIWFDSRLLVTLDIEVPERIYISKNKA
SEFKSWIVSLE

Sequences:

>Translated_251_residues
MRILIVEDETAAYENLADMLVTIDPTLEIMGNTESVQQTVRWLQANPRPDLIFMDIHLSDGSAFAIFDQIEVEAPIIFTT
AYDQYAIDAFKVNSIDYILKPIKSEELKRALDKFSRWNHQDIIHYLSQLTQLSTTPKYKDKLLIPIKDKLLPISLKDVSC
FYTADKNTYVYLKSGNSYPYAKTLEQIISSLSPADFIRANKQFIISRDSVKDITIWFDSRLLVTLDIEVPERIYISKNKA
SEFKSWIVSLE
>Mature_251_residues
MRILIVEDETAAYENLADMLVTIDPTLEIMGNTESVQQTVRWLQANPRPDLIFMDIHLSDGSAFAIFDQIEVEAPIIFTT
AYDQYAIDAFKVNSIDYILKPIKSEELKRALDKFSRWNHQDIIHYLSQLTQLSTTPKYKDKLLIPIKDKLLPISLKDVSC
FYTADKNTYVYLKSGNSYPYAKTLEQIISSLSPADFIRANKQFIISRDSVKDITIWFDSRLLVTLDIEVPERIYISKNKA
SEFKSWIVSLE

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=251, Percent_Identity=27.8884462151394, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87082052, Length=221, Percent_Identity=26.2443438914027, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28976; Mature: 28976

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILIVEDETAAYENLADMLVTIDPTLEIMGNTESVQQTVRWLQANPRPDLIFMDIHLSD
CEEEEEECCHHHHHHHHHEEEEECCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEECC
GSAFAIFDQIEVEAPIIFTTAYDQYAIDAFKVNSIDYILKPIKSEELKRALDKFSRWNHQ
CCEEEEEEEEEECCCEEEEECCCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHCCCHH
DIIHYLSQLTQLSTTPKYKDKLLIPIKDKLLPISLKDVSCFYTADKNTYVYLKSGNSYPY
HHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCEEEEEEECCCEEEEEECCCCCCH
AKTLEQIISSLSPADFIRANKQFIISRDSVKDITIWFDSRLLVTLDIEVPERIYISKNKA
HHHHHHHHHHCCCHHHHHCCCEEEEECCCCEEEEEEECCEEEEEEEECCCCEEEEECCCH
SEFKSWIVSLE
HHHHHEEEECC
>Mature Secondary Structure
MRILIVEDETAAYENLADMLVTIDPTLEIMGNTESVQQTVRWLQANPRPDLIFMDIHLSD
CEEEEEECCHHHHHHHHHEEEEECCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEECC
GSAFAIFDQIEVEAPIIFTTAYDQYAIDAFKVNSIDYILKPIKSEELKRALDKFSRWNHQ
CCEEEEEEEEEECCCEEEEECCCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHCCCHH
DIIHYLSQLTQLSTTPKYKDKLLIPIKDKLLPISLKDVSCFYTADKNTYVYLKSGNSYPY
HHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCEEEEEEECCCEEEEEECCCCCCH
AKTLEQIISSLSPADFIRANKQFIISRDSVKDITIWFDSRLLVTLDIEVPERIYISKNKA
HHHHHHHHHHCCCHHHHHCCCEEEEECCCCEEEEEEECCEEEEEEEECCCCEEEEECCCH
SEFKSWIVSLE
HHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]