| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is 150009123
Identifier: 150009123
GI number: 150009123
Start: 2983369
End: 2984964
Strand: Direct
Name: 150009123
Synonym: BDI_2524
Alternate gene names: NA
Gene position: 2983369-2984964 (Clockwise)
Preceding gene: 150009122
Following gene: 150009124
Centisome position: 62.01
GC content: 47.87
Gene sequence:
>1596_bases ATGTTATACAAGAAATTATATAAAAACATTTCAGTAGTAGCGTTAGGGACAGCCCTGTTCTCGCTACCCGTGTTCACCGC CTGCGAAAGCGACGTCGTAGACCTTGAACCTGTTGACAAATTCTCCGAGCTTACGGCATACGGGACAGAAGAACGTTGCG AGTTAGCCGTAGTCGGAGCTTACGATGCCGCACAATGTGGTATGTACGTAGATCCAAATGACTTTGGGTGGGCACGCGGT TATCCTTTTGGAGCGGCCAGTATATTGCAAGGCGAAATGCGCGGTGAAGATATGAACCTAACCGCCCAATTCTATGATTA TACCTATTCCGCGACCTATAATTTGACTACCGCTAATAACGTGGCGATGTGGGAAACCTCTTTCGAGGCTATTAACCGCT ATAATACGGTATACGCAGGTATAGAAGGTGCGGTAGCTGCGGGTGTCATAACCGAAGAGAAAGGGAATCAGTACAAAGGA GAATGCCTGTTCTTACGTGCGTTAACCTATCACAACTTGATGATCCATTATGCCCTGCCCTACAACGTAGAAGGTAACAA TAACTACGGTATGCCTATTTATACGAAAGCCGTAAATGATCCCAGCCAACTCGCTGAGCAACAAAGCATAGGCCGTTCTA CCGTTAAGGATACTTACGATCAGATATTAAGCGACTTGAATAATGCGGAAAGCATGCTTCCGGACATTATCGATGCCGAT AAGATCGGCCGCGCAAGCAAAGGTGCCGCCATAGCACTGAAAACGCGCGTATATTTGCATATGCGTGATTGGAACAATGT AGTTACTGAAGCTAAGAAACTGGAAGGCGGACGTTTCATTCTGGAAACCAATCCAGCCACTCCTTTCGTTTCTTACAAAG ACAATCAGGAATCTATATTCTCCATTCCGAATGACTCTCAAGATAACGGGTCTGTAAATGGAGCTATGTCCGCTATGATG TCTGCCCGTGAAGGTGGCCGTGCGATGTGCCCGACATCCCCTACCCTTTACAACTCCAAATTCTGGAAAGGGGATGACAA GCGTCGTAACCTCGTCCTTTATCGTGCGTCTGACGATTATTACTTCTGTGATAAATACCAGAATCCCCAAACACGTGAAG AGTACGCCCCGATCCTGCGCTATGCCGAGGTATTGCTAAACGAGGCCGAGGCTGCCGCACGTGCGGGAGACAAGACTCTC GCATTGGAGAAATTGAATCAAGTAAGAGACCGTTCTTTGGCCGACCCCGCTACACAGACGTATAAGGCAAGCGATTTCGC CAACACGAAAGCACTGGTGGAAGCTATCCTTTGGGAGCGTCGCATTGAGTTCCAAGGTGAAGGTCGCCGTTGGGAAGACA TTCATCGTTTAGCGGCTGACGACTTGCTGCCGTCCGGTGGTATTCCCGCTAAAATCGAATATAACAATGTGAAGAACCAA GGCGCATTCGTTGTTGGTGGAGAAGTGAAAGCTGAATGGTTCGGCAACAGCAAACAGTTCATCCCGTACACGGATAAACG CTTTATTTGGCCGATTCCATTGAATGATATATTAAGAAACCCCACGCTAGCCGCACAACAGAACGCAGGCTGGTAG
Upstream 100 bases:
>100_bases TCGTTTAGGTGTAGATTGGAACGGTATGCCACAGCAACGTTCATTCACTTTTGGAGCGAACATTACATTCTAATTTCACA AACTAAGAAAAGTTACAATT
Downstream 100 bases:
>100_bases AATATAGACACACTCTTATTTTTTACTATGCAGGGGACATGAGAGGGCGAGACCGGGAGGTTCCGCCCTCTTTTCTTTTA AAACGTATTGACATAATAAT
Product: hypothetical protein
Products: NA
Alternate protein names: RagB/SusD Domain-Containing Protein; Outer Membrane Protein; SusD/RagB Family Protein; Ragb/Susd Domain Protein; Liporotein; Ragb/Susd DomaiN-Containing Protein
Number of amino acids: Translated: 531; Mature: 531
Protein sequence:
>531_residues MLYKKLYKNISVVALGTALFSLPVFTACESDVVDLEPVDKFSELTAYGTEERCELAVVGAYDAAQCGMYVDPNDFGWARG YPFGAASILQGEMRGEDMNLTAQFYDYTYSATYNLTTANNVAMWETSFEAINRYNTVYAGIEGAVAAGVITEEKGNQYKG ECLFLRALTYHNLMIHYALPYNVEGNNNYGMPIYTKAVNDPSQLAEQQSIGRSTVKDTYDQILSDLNNAESMLPDIIDAD KIGRASKGAAIALKTRVYLHMRDWNNVVTEAKKLEGGRFILETNPATPFVSYKDNQESIFSIPNDSQDNGSVNGAMSAMM SAREGGRAMCPTSPTLYNSKFWKGDDKRRNLVLYRASDDYYFCDKYQNPQTREEYAPILRYAEVLLNEAEAAARAGDKTL ALEKLNQVRDRSLADPATQTYKASDFANTKALVEAILWERRIEFQGEGRRWEDIHRLAADDLLPSGGIPAKIEYNNVKNQ GAFVVGGEVKAEWFGNSKQFIPYTDKRFIWPIPLNDILRNPTLAAQQNAGW
Sequences:
>Translated_531_residues MLYKKLYKNISVVALGTALFSLPVFTACESDVVDLEPVDKFSELTAYGTEERCELAVVGAYDAAQCGMYVDPNDFGWARG YPFGAASILQGEMRGEDMNLTAQFYDYTYSATYNLTTANNVAMWETSFEAINRYNTVYAGIEGAVAAGVITEEKGNQYKG ECLFLRALTYHNLMIHYALPYNVEGNNNYGMPIYTKAVNDPSQLAEQQSIGRSTVKDTYDQILSDLNNAESMLPDIIDAD KIGRASKGAAIALKTRVYLHMRDWNNVVTEAKKLEGGRFILETNPATPFVSYKDNQESIFSIPNDSQDNGSVNGAMSAMM SAREGGRAMCPTSPTLYNSKFWKGDDKRRNLVLYRASDDYYFCDKYQNPQTREEYAPILRYAEVLLNEAEAAARAGDKTL ALEKLNQVRDRSLADPATQTYKASDFANTKALVEAILWERRIEFQGEGRRWEDIHRLAADDLLPSGGIPAKIEYNNVKNQ GAFVVGGEVKAEWFGNSKQFIPYTDKRFIWPIPLNDILRNPTLAAQQNAGW >Mature_531_residues MLYKKLYKNISVVALGTALFSLPVFTACESDVVDLEPVDKFSELTAYGTEERCELAVVGAYDAAQCGMYVDPNDFGWARG YPFGAASILQGEMRGEDMNLTAQFYDYTYSATYNLTTANNVAMWETSFEAINRYNTVYAGIEGAVAAGVITEEKGNQYKG ECLFLRALTYHNLMIHYALPYNVEGNNNYGMPIYTKAVNDPSQLAEQQSIGRSTVKDTYDQILSDLNNAESMLPDIIDAD KIGRASKGAAIALKTRVYLHMRDWNNVVTEAKKLEGGRFILETNPATPFVSYKDNQESIFSIPNDSQDNGSVNGAMSAMM SAREGGRAMCPTSPTLYNSKFWKGDDKRRNLVLYRASDDYYFCDKYQNPQTREEYAPILRYAEVLLNEAEAAARAGDKTL ALEKLNQVRDRSLADPATQTYKASDFANTKALVEAILWERRIEFQGEGRRWEDIHRLAADDLLPSGGIPAKIEYNNVKNQ GAFVVGGEVKAEWFGNSKQFIPYTDKRFIWPIPLNDILRNPTLAAQQNAGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59439; Mature: 59439
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYKKLYKNISVVALGTALFSLPVFTACESDVVDLEPVDKFSELTAYGTEERCELAVVGA CCHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEC YDAAQCGMYVDPNDFGWARGYPFGAASILQGEMRGEDMNLTAQFYDYTYSATYNLTTANN CCHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEEEEECCC VAMWETSFEAINRYNTVYAGIEGAVAAGVITEEKGNQYKGECLFLRALTYHNLMIHYALP EEEEEHHHHHHHHCCEEEECCCCCCEECEEECCCCCCCCCCEEEEEEEHHCCEEEEEEEE YNVEGNNNYGMPIYTKAVNDPSQLAEQQSIGRSTVKDTYDQILSDLNNAESMLPDIIDAD EEECCCCCCCCEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHHHHCHH KIGRASKGAAIALKTRVYLHMRDWNNVVTEAKKLEGGRFILETNPATPFVSYKDNQESIF HCCCCCCCCEEEEEEEEEEEEECHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCEE SIPNDSQDNGSVNGAMSAMMSAREGGRAMCPTSPTLYNSKFWKGDDKRRNLVLYRASDDY ECCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCE YFCDKYQNPQTREEYAPILRYAEVLLNEAEAAARAGDKTLALEKLNQVRDRSLADPATQT EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHC YKASDFANTKALVEAILWERRIEFQGEGRRWEDIHRLAADDLLPSGGIPAKIEYNNVKNQ EECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCC GAFVVGGEVKAEWFGNSKQFIPYTDKRFIWPIPLNDILRNPTLAAQQNAGW CCEEECCEEEEEEECCCCCCCEECCCCEEECCCHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MLYKKLYKNISVVALGTALFSLPVFTACESDVVDLEPVDKFSELTAYGTEERCELAVVGA CCHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEC YDAAQCGMYVDPNDFGWARGYPFGAASILQGEMRGEDMNLTAQFYDYTYSATYNLTTANN CCHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEEEEEEEECCC VAMWETSFEAINRYNTVYAGIEGAVAAGVITEEKGNQYKGECLFLRALTYHNLMIHYALP EEEEEHHHHHHHHCCEEEECCCCCCEECEEECCCCCCCCCCEEEEEEEHHCCEEEEEEEE YNVEGNNNYGMPIYTKAVNDPSQLAEQQSIGRSTVKDTYDQILSDLNNAESMLPDIIDAD EEECCCCCCCCEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHHHHCHH KIGRASKGAAIALKTRVYLHMRDWNNVVTEAKKLEGGRFILETNPATPFVSYKDNQESIF HCCCCCCCCEEEEEEEEEEEEECHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCEE SIPNDSQDNGSVNGAMSAMMSAREGGRAMCPTSPTLYNSKFWKGDDKRRNLVLYRASDDY ECCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCE YFCDKYQNPQTREEYAPILRYAEVLLNEAEAAARAGDKTLALEKLNQVRDRSLADPATQT EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHC YKASDFANTKALVEAILWERRIEFQGEGRRWEDIHRLAADDLLPSGGIPAKIEYNNVKNQ EECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCC GAFVVGGEVKAEWFGNSKQFIPYTDKRFIWPIPLNDILRNPTLAAQQNAGW CCEEECCEEEEEEECCCCCCCEECCCCEEECCCHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA