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The map label for this gene is fecI [C]

Identifier: 150009070

GI number: 150009070

Start: 2909012

End: 2909584

Strand: Reverse

Name: fecI [C]

Synonym: BDI_2471

Alternate gene names: 150009070

Gene position: 2909584-2909012 (Counterclockwise)

Preceding gene: 150009071

Following gene: 150009069

Centisome position: 60.47

GC content: 38.39

Gene sequence:

>573_bases
ATGGATGTAGAACGGATATACCTAGAACGATTACGAAGCGGTTCATACAGAGACTTTACGAAACTGTATGAATCATACGC
TTCACGCTTATATGCGTTCGCATTGCACTTGACTCATTCTGATGCTCTTGCAAAAGATATTGTACAAGAGACTTTTATCA
AAGTGTGGGTGCGGAGAGAACAGATTGATTTAGATATGTCTTTCAGTGCTTTCCTATTTACGATGGCCAAGAACCAATTA
TTGAATGAGTTTCGTAGGCAGGCAAATAGTCCACTTTTTTTGGAAGATGTTGTACTGAATGAGTCTGGAGATGGAGAGGA
AACAGCGATTGAACGTAAATTATCTTTTGAGGAATTTAACCATAGACTGGAAATAGCGAAACAAAAGTTGACACCTCGCC
AACGAGAACTGTTTGAGTTAAATAAGGAACAAGGTATAACTATAACAGAAATAGCGGCTAAAGCCTTTATTTCAGAACAA
TCTGTGCGTAACCAGTTATCGCAAGCCTTACATGTTTTAAGAAAGGAGCTCGGTAAGTATGCTTTGCTGTTCTCTCTTTT
CTTTATCGGATAA

Upstream 100 bases:

>100_bases
AGAGTATCTGTAGTAGATAGAGGTTATTTCTTTTCAAGAGGAAATAACCTCTTCTTATTTTTTTATTTTATATTTGTTCG
GTCAATATGTGCTAGAGGAG

Downstream 100 bases:

>100_bases
ATAAAATTGAAAAAATAATATTCTTATGTTTTATAACATCTAAAAAGACATGTTATAAATTAACGGCTCATGTGTATACC
TTATAAAAAGGGTATTATGC

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor SigL; RNA Polymerase Sigma-W Factor; ECF-Type RNA Polymerase; RNA Polymerase ECF-Type Sigma Factor Family Protein; Sigma Factor; RNA Polymerase ECF Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MDVERIYLERLRSGSYRDFTKLYESYASRLYAFALHLTHSDALAKDIVQETFIKVWVRREQIDLDMSFSAFLFTMAKNQL
LNEFRRQANSPLFLEDVVLNESGDGEETAIERKLSFEEFNHRLEIAKQKLTPRQRELFELNKEQGITITEIAAKAFISEQ
SVRNQLSQALHVLRKELGKYALLFSLFFIG

Sequences:

>Translated_190_residues
MDVERIYLERLRSGSYRDFTKLYESYASRLYAFALHLTHSDALAKDIVQETFIKVWVRREQIDLDMSFSAFLFTMAKNQL
LNEFRRQANSPLFLEDVVLNESGDGEETAIERKLSFEEFNHRLEIAKQKLTPRQRELFELNKEQGITITEIAAKAFISEQ
SVRNQLSQALHVLRKELGKYALLFSLFFIG
>Mature_190_residues
MDVERIYLERLRSGSYRDFTKLYESYASRLYAFALHLTHSDALAKDIVQETFIKVWVRREQIDLDMSFSAFLFTMAKNQL
LNEFRRQANSPLFLEDVVLNESGDGEETAIERKLSFEEFNHRLEIAKQKLTPRQRELFELNKEQGITITEIAAKAFISEQ
SVRNQLSQALHVLRKELGKYALLFSLFFIG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22280; Mature: 22280

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVERIYLERLRSGSYRDFTKLYESYASRLYAFALHLTHSDALAKDIVQETFIKVWVRRE
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIDLDMSFSAFLFTMAKNQLLNEFRRQANSPLFLEDVVLNESGDGEETAIERKLSFEEFN
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH
HRLEIAKQKLTPRQRELFELNKEQGITITEIAAKAFISEQSVRNQLSQALHVLRKELGKY
HHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFSLFFIG
HHHHHHHHCC
>Mature Secondary Structure
MDVERIYLERLRSGSYRDFTKLYESYASRLYAFALHLTHSDALAKDIVQETFIKVWVRRE
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIDLDMSFSAFLFTMAKNQLLNEFRRQANSPLFLEDVVLNESGDGEETAIERKLSFEEFN
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH
HRLEIAKQKLTPRQRELFELNKEQGITITEIAAKAFISEQSVRNQLSQALHVLRKELGKY
HHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFSLFFIG
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA