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The map label for this gene is 150009066

Identifier: 150009066

GI number: 150009066

Start: 2901419

End: 2902759

Strand: Reverse

Name: 150009066

Synonym: BDI_2467

Alternate gene names: NA

Gene position: 2902759-2901419 (Counterclockwise)

Preceding gene: 150009067

Following gene: 150009065

Centisome position: 60.33

GC content: 41.76

Gene sequence:

>1341_bases
ATGAAGATGATAGATGTATCGAAAGTAAGAGTCTTTCGGGGGAGTCTCTTTGTATTGCTTATGCTCTTTATGCGGATAGG
TTGGGCCTCAAATGATGATAGCACCTATAATATCGTGGATTTTGGAGCTAAAGGAGATGGAATAACAGACAATACCCAGT
TCATCAACAGGACAATAGAAGCTTGTTCCTTGAGAGGGGGAGGAACGGTTATCATTCCGGAGGGAACGTTTTTGACAGGA
AGTATTCTGCTGAAAAGTAAAGTAAACTTATTCTTAGAAAGTAATGCCGTAGTGAAAGGCATAAATAATCTGGAAAAGTA
CCGTTCTATATCCGATCTTAATCAAGATGAGGCTTATTATAAAGTAAAACCCCGGAATTGGAACAAGGCATTGCTTTTAG
GAGATCAAGTTGAAGGTGTGTCAATTACAGGAGAGGGGGTAATCGATGGTGCCCATATTCAAGATAAAAAAGGTGAAGAA
GGGATGAGAGGCCCTCATATTCTCTTTTTGTCGAGATCGAAAGGGATTAAGATATCGGGAGTTAAACTACGAAGAGCATC
GAACTATGCTTTTATGAGTTATGATATTGAAAGGGCTTCTTTCGATAATCTTTTAGTGGAGGAAGGATGGGATGGGATTC
ATATTCGTGGCGGAAAAGATATCCGTATCCGAAATTGCCGTTTTTATACGGGTGATGATGCTGTTGCGGGTGGGCTATGG
AAGAATATGGTAATAGAGAATTGCTATATGAACTCATCGTGCAATGGGATAAGGTTGATAATGCCGGCTACTGGTTTAAA
GATCGTTGATTGTGAATTTAGAGGTCCGGGAAAATATCCACATCGGACTTCCGGTGAACAAAAACGTAGGAATATGCTTT
CTGGAATATTGCTCCAACCGGGCGCATGGTTCCCTGCGTTTGGGGAAGTAAAGGATATATTGATATCTAGCTGTTCTTTT
GATCAATTGGATAATCCGTTTCTAGTCACATTGAATGAGGGGAACCGGGGAGAGCGGATCTGTCTGGAGCATATAAGAGG
TACACGTTTAATGAAAGCGGCCGCCTCGGTAGAGAGTTGGGGAGATAGTAGTTTGAAAGATGTCCGGCTTTCGGATGTTT
CCTTATCGTATGTTGGAAACAAAGATCAAGAAATAGTAGGACGTACTCCCTCGAAGCCATTGACCGATTATCGTGCGCTC
CCTTGCTGGGGGCTTTACCTTCATAATTTAGATCGAGTGATTTTACGGAATGTTCGGTTAGATTGTGAGAATGGGAAAGT
TGGCCCAGCCTCTTGTTTCGATAATGTGGGGTCCGTGGAGATTTATAATGTAAGTTTTTAA

Upstream 100 bases:

>100_bases
TGAAAAGTTCATCAAAGAAAAGGAATAGGATAGTTCTCTTGGGATCGCTAATCCTATTCTTTTTTTATTCCTTTATGATC
ATATTAAATCTTATTGAATA

Downstream 100 bases:

>100_bases
TCTTAAAAAGAATTAGTATGCGAAAATATCTTTTGTTTTGTCTAGCTTTTTGTGTATTGGGTTGTTTGGCTCAAGATTTG
ATTGTCCGTCCGAACGATCC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Glycoside Hydrolase Family Protein; Polygalacturonase; Exo-Poly-Alpha-D-Galacturonosidase; Galacturan 1 4-Alpha-Galacturonidase; Glycosy Hydrolase Family Protein; Endo-Polygalacturonase; Endopolygalacturonase; Exopolygalacturonase; Polygalacturonase/Beta-Xylosidase; Pectate Lyase; Lipolytic Protein G-D-S-L Family; Glycoside Hydrolase; Polygalacturonase Family Protein

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MKMIDVSKVRVFRGSLFVLLMLFMRIGWASNDDSTYNIVDFGAKGDGITDNTQFINRTIEACSLRGGGTVIIPEGTFLTG
SILLKSKVNLFLESNAVVKGINNLEKYRSISDLNQDEAYYKVKPRNWNKALLLGDQVEGVSITGEGVIDGAHIQDKKGEE
GMRGPHILFLSRSKGIKISGVKLRRASNYAFMSYDIERASFDNLLVEEGWDGIHIRGGKDIRIRNCRFYTGDDAVAGGLW
KNMVIENCYMNSSCNGIRLIMPATGLKIVDCEFRGPGKYPHRTSGEQKRRNMLSGILLQPGAWFPAFGEVKDILISSCSF
DQLDNPFLVTLNEGNRGERICLEHIRGTRLMKAAASVESWGDSSLKDVRLSDVSLSYVGNKDQEIVGRTPSKPLTDYRAL
PCWGLYLHNLDRVILRNVRLDCENGKVGPASCFDNVGSVEIYNVSF

Sequences:

>Translated_446_residues
MKMIDVSKVRVFRGSLFVLLMLFMRIGWASNDDSTYNIVDFGAKGDGITDNTQFINRTIEACSLRGGGTVIIPEGTFLTG
SILLKSKVNLFLESNAVVKGINNLEKYRSISDLNQDEAYYKVKPRNWNKALLLGDQVEGVSITGEGVIDGAHIQDKKGEE
GMRGPHILFLSRSKGIKISGVKLRRASNYAFMSYDIERASFDNLLVEEGWDGIHIRGGKDIRIRNCRFYTGDDAVAGGLW
KNMVIENCYMNSSCNGIRLIMPATGLKIVDCEFRGPGKYPHRTSGEQKRRNMLSGILLQPGAWFPAFGEVKDILISSCSF
DQLDNPFLVTLNEGNRGERICLEHIRGTRLMKAAASVESWGDSSLKDVRLSDVSLSYVGNKDQEIVGRTPSKPLTDYRAL
PCWGLYLHNLDRVILRNVRLDCENGKVGPASCFDNVGSVEIYNVSF
>Mature_446_residues
MKMIDVSKVRVFRGSLFVLLMLFMRIGWASNDDSTYNIVDFGAKGDGITDNTQFINRTIEACSLRGGGTVIIPEGTFLTG
SILLKSKVNLFLESNAVVKGINNLEKYRSISDLNQDEAYYKVKPRNWNKALLLGDQVEGVSITGEGVIDGAHIQDKKGEE
GMRGPHILFLSRSKGIKISGVKLRRASNYAFMSYDIERASFDNLLVEEGWDGIHIRGGKDIRIRNCRFYTGDDAVAGGLW
KNMVIENCYMNSSCNGIRLIMPATGLKIVDCEFRGPGKYPHRTSGEQKRRNMLSGILLQPGAWFPAFGEVKDILISSCSF
DQLDNPFLVTLNEGNRGERICLEHIRGTRLMKAAASVESWGDSSLKDVRLSDVSLSYVGNKDQEIVGRTPSKPLTDYRAL
PCWGLYLHNLDRVILRNVRLDCENGKVGPASCFDNVGSVEIYNVSF

Specific function: Unknown

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49638; Mature: 49638

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMIDVSKVRVFRGSLFVLLMLFMRIGWASNDDSTYNIVDFGAKGDGITDNTQFINRTIE
CCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
ACSLRGGGTVIIPEGTFLTGSILLKSKVNLFLESNAVVKGINNLEKYRSISDLNQDEAYY
HHCCCCCCEEEEECCCEEEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEE
KVKPRNWNKALLLGDQVEGVSITGEGVIDGAHIQDKKGEEGMRGPHILFLSRSKGIKISG
EECCCCCCEEEEEECCCCCEEEECCCEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEE
VKLRRASNYAFMSYDIERASFDNLLVEEGWDGIHIRGGKDIRIRNCRFYTGDDAVAGGLW
EEEEECCCEEEEEEECCHHCCCCCHHHCCCCEEEEECCCEEEEEEEEEECCCCHHHCHHH
KNMVIENCYMNSSCNGIRLIMPATGLKIVDCEFRGPGKYPHRTSGEQKRRNMLSGILLQP
HHHHHHHEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCEEECC
GAWFPAFGEVKDILISSCSFDQLDNPFLVTLNEGNRGERICLEHIRGTRLMKAAASVESW
CCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHC
GDSSLKDVRLSDVSLSYVGNKDQEIVGRTPSKPLTDYRALPCWGLYLHNLDRVILRNVRL
CCCCCCEEEEEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEE
DCENGKVGPASCFDNVGSVEIYNVSF
ECCCCCCCCHHHHCCCCCEEEEEECC
>Mature Secondary Structure
MKMIDVSKVRVFRGSLFVLLMLFMRIGWASNDDSTYNIVDFGAKGDGITDNTQFINRTIE
CCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
ACSLRGGGTVIIPEGTFLTGSILLKSKVNLFLESNAVVKGINNLEKYRSISDLNQDEAYY
HHCCCCCCEEEEECCCEEEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEE
KVKPRNWNKALLLGDQVEGVSITGEGVIDGAHIQDKKGEEGMRGPHILFLSRSKGIKISG
EECCCCCCEEEEEECCCCCEEEECCCEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEE
VKLRRASNYAFMSYDIERASFDNLLVEEGWDGIHIRGGKDIRIRNCRFYTGDDAVAGGLW
EEEEECCCEEEEEEECCHHCCCCCHHHCCCCEEEEECCCEEEEEEEEEECCCCHHHCHHH
KNMVIENCYMNSSCNGIRLIMPATGLKIVDCEFRGPGKYPHRTSGEQKRRNMLSGILLQP
HHHHHHHEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCEEECC
GAWFPAFGEVKDILISSCSFDQLDNPFLVTLNEGNRGERICLEHIRGTRLMKAAASVESW
CCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHC
GDSSLKDVRLSDVSLSYVGNKDQEIVGRTPSKPLTDYRALPCWGLYLHNLDRVILRNVRL
CCCCCCEEEEEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEE
DCENGKVGPASCFDNVGSVEIYNVSF
ECCCCCCCCHHHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA