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The map label for this gene is lytT [H]

Identifier: 150008949

GI number: 150008949

Start: 2767818

End: 2768579

Strand: Direct

Name: lytT [H]

Synonym: BDI_2345

Alternate gene names: 150008949

Gene position: 2767818-2768579 (Clockwise)

Preceding gene: 150008948

Following gene: 150008950

Centisome position: 57.53

GC content: 50.52

Gene sequence:

>762_bases
ATGAAAGCAGTTATTATAGAAGATGAGACTACCGCCGTTAATAGCCTAAAGGCGATCTTGGCGCAAAATACGGTTACTCA
GATCGAAGTGATCGCCGAGTTGGAGAGTATCGAGGAGAGCGTGGATTTCTTCCGGACATCGCCTCATCCGGATATCATCT
TCATGGATATCCATTTAGCGGACGGATCGGCGTTCAAGATATTCGAGCAGGTGGAGATAGATGCCCCAGTAGTCTTCACG
ACCGCCTACGATGAGTATGCGTTACAGGCTTTTCAAGTAAGCAGTATCGATTATCTACTGAAGCCTGTCACGCTGGCCTC
GCTGGAAAGGGCCTTGAATAAATTACGGCTGTTCGATACCGAGGAAAGGCTGGCGCATATCCGGCAAACGAACCGTACGA
TCCAGAGTCGCCACACGATCAAGAGCCTGTTGATCATGCTGGCCGATAAATTCTATCCGTTGGCGGTTGAGGAGATCCTT
TATTTCTATACGGCCAACGAGAAGGTTACCGCCTATACCTCCGACGGGAAGCAACATCCCGTAGACCGTACCCTCGACGC
GTTGGGAGAGCAACTGGACGAGAGGCTTTTCTTCCGGGCCAACCGTCAATTCATCATTTCACGCAACGCCATCAAGGATA
TAGATCTTTGGTTCGGGAGCCGCCTGTCCGTCAACCTCACCTTGCCGGTTCCCGAACGTATCATCATCAGCAAGGCCAAG
ACCCCGATCTTCAAGAAATGGATTCTGAGGGAAGAGGAATAA

Upstream 100 bases:

>100_bases
GGGGGCGCTACCGGATGCTTACCGGAAAGGACATCCAGATCTCCAACCGCAAGGAATATTTCAAGGTCACGCTTCCTTTA
CTTAATAAACCCATTCACTC

Downstream 100 bases:

>100_bases
TGTCTTTTCACCCCCTCCCGTAAGGCGATTCACCGACCCGATTATACCACTAATCGGCGCTTAACCTTTCTTTACCGAAC
TTTCCTGTTATTTCGCGGTA

Product: two-component system response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKAVIIEDETTAVNSLKAILAQNTVTQIEVIAELESIEESVDFFRTSPHPDIIFMDIHLADGSAFKIFEQVEIDAPVVFT
TAYDEYALQAFQVSSIDYLLKPVTLASLERALNKLRLFDTEERLAHIRQTNRTIQSRHTIKSLLIMLADKFYPLAVEEIL
YFYTANEKVTAYTSDGKQHPVDRTLDALGEQLDERLFFRANRQFIISRNAIKDIDLWFGSRLSVNLTLPVPERIIISKAK
TPIFKKWILREEE

Sequences:

>Translated_253_residues
MKAVIIEDETTAVNSLKAILAQNTVTQIEVIAELESIEESVDFFRTSPHPDIIFMDIHLADGSAFKIFEQVEIDAPVVFT
TAYDEYALQAFQVSSIDYLLKPVTLASLERALNKLRLFDTEERLAHIRQTNRTIQSRHTIKSLLIMLADKFYPLAVEEIL
YFYTANEKVTAYTSDGKQHPVDRTLDALGEQLDERLFFRANRQFIISRNAIKDIDLWFGSRLSVNLTLPVPERIIISKAK
TPIFKKWILREEE
>Mature_253_residues
MKAVIIEDETTAVNSLKAILAQNTVTQIEVIAELESIEESVDFFRTSPHPDIIFMDIHLADGSAFKIFEQVEIDAPVVFT
TAYDEYALQAFQVSSIDYLLKPVTLASLERALNKLRLFDTEERLAHIRQTNRTIQSRHTIKSLLIMLADKFYPLAVEEIL
YFYTANEKVTAYTSDGKQHPVDRTLDALGEQLDERLFFRANRQFIISRNAIKDIDLWFGSRLSVNLTLPVPERIIISKAK
TPIFKKWILREEE

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082052, Length=243, Percent_Identity=25.5144032921811, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788724, Length=260, Percent_Identity=26.1538461538462, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29110; Mature: 29110

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAVIIEDETTAVNSLKAILAQNTVTQIEVIAELESIEESVDFFRTSPHPDIIFMDIHLA
CCEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
DGSAFKIFEQVEIDAPVVFTTAYDEYALQAFQVSSIDYLLKPVTLASLERALNKLRLFDT
CCCCEEEEEHEECCCCEEEEECCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCC
EERLAHIRQTNRTIQSRHTIKSLLIMLADKFYPLAVEEILYFYTANEKVTAYTSDGKQHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEECCCEEEEEECCCCCCC
VDRTLDALGEQLDERLFFRANRQFIISRNAIKDIDLWFGSRLSVNLTLPVPERIIISKAK
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCEEEEEEEECCCCCEEEECCC
TPIFKKWILREEE
CHHHHHHHCCCCC
>Mature Secondary Structure
MKAVIIEDETTAVNSLKAILAQNTVTQIEVIAELESIEESVDFFRTSPHPDIIFMDIHLA
CCEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
DGSAFKIFEQVEIDAPVVFTTAYDEYALQAFQVSSIDYLLKPVTLASLERALNKLRLFDT
CCCCEEEEEHEECCCCEEEEECCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCC
EERLAHIRQTNRTIQSRHTIKSLLIMLADKFYPLAVEEILYFYTANEKVTAYTSDGKQHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEECCCEEEEEECCCCCCC
VDRTLDALGEQLDERLFFRANRQFIISRNAIKDIDLWFGSRLSVNLTLPVPERIIISKAK
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCEEEEEEEECCCCCEEEECCC
TPIFKKWILREEE
CHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]