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The map label for this gene is rpoE [C]

Identifier: 150008929

GI number: 150008929

Start: 2736243

End: 2736836

Strand: Reverse

Name: rpoE [C]

Synonym: BDI_2325

Alternate gene names: 150008929

Gene position: 2736836-2736243 (Counterclockwise)

Preceding gene: 150008930

Following gene: 150008928

Centisome position: 56.88

GC content: 38.72

Gene sequence:

>594_bases
ATGTCTTTTTTTCAGAAATCCATACGGAGCGATGAAGATCTGCTCACCTCATTGAGGCAGGGGAGCGAGGATGCGTTTAC
TGTTATTTATGAGCGGTATCATAAATTATTGTATGTGTTGGCCTATAAATATTTGAAAAGTACATATTCTTCGGAAGATG
CCGTACAGCAAGTTTTTCTGAAATTGTGGGAGGCACGTTCCCTACTGATGGTGAACGTGAATTTAAGGAACTATCTCTAT
ACAATGCTAAAGAATCACGTATTAAATGAGATCCGGAATAATAATAGCGCCGTAGAGAAAAATTATGAGATCGTACAATC
AGCGCCGGAATATGAGGATGAACTGCTTATAAAGATAGAGGAACAAGATATGATGTCTCATTTTTACCAAGCGATCGATC
ATTTGCCGGAGCAGAAACGCCAAGTCTGTCTGTATAAGCTGAAAGGGAATCTATCTAATCAAGAAATCGCCGATAAGATG
AATATCTCGGTCCCCACGGTAAAAACACATTATGCGCAAGCGATAAAAATACTGCGGGCACATTTCGAGAGACTATTTTT
ATTTCTTTTATATTTGTGGAACTCATCCTATTGA

Upstream 100 bases:

>100_bases
ATCGATCAGTGAAGGTGCGGTTACACAGGTGCCGGATGCCATGAAGGAGGAAGCGGAACGTCTGTTAAATAGCGAATCGT
ATATTATATAGTCTCCTCGA

Downstream 100 bases:

>100_bases
TGGCTTTGCGTGTCAATTGATAAAAGAAAATGAATATGAAAATACCCGATCTATCGATCATAGAGAAAACGCTAAATAAT
GAGGCTACTTCCGAGGAGTC

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSFFQKSIRSDEDLLTSLRQGSEDAFTVIYERYHKLLYVLAYKYLKSTYSSEDAVQQVFLKLWEARSLLMVNVNLRNYLY
TMLKNHVLNEIRNNNSAVEKNYEIVQSAPEYEDELLIKIEEQDMMSHFYQAIDHLPEQKRQVCLYKLKGNLSNQEIADKM
NISVPTVKTHYAQAIKILRAHFERLFLFLLYLWNSSY

Sequences:

>Translated_197_residues
MSFFQKSIRSDEDLLTSLRQGSEDAFTVIYERYHKLLYVLAYKYLKSTYSSEDAVQQVFLKLWEARSLLMVNVNLRNYLY
TMLKNHVLNEIRNNNSAVEKNYEIVQSAPEYEDELLIKIEEQDMMSHFYQAIDHLPEQKRQVCLYKLKGNLSNQEIADKM
NISVPTVKTHYAQAIKILRAHFERLFLFLLYLWNSSY
>Mature_196_residues
SFFQKSIRSDEDLLTSLRQGSEDAFTVIYERYHKLLYVLAYKYLKSTYSSEDAVQQVFLKLWEARSLLMVNVNLRNYLYT
MLKNHVLNEIRNNNSAVEKNYEIVQSAPEYEDELLIKIEEQDMMSHFYQAIDHLPEQKRQVCLYKLKGNLSNQEIADKMN
ISVPTVKTHYAQAIKILRAHFERLFLFLLYLWNSSY

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23485; Mature: 23354

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFFQKSIRSDEDLLTSLRQGSEDAFTVIYERYHKLLYVLAYKYLKSTYSSEDAVQQVFL
CCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KLWEARSLLMVNVNLRNYLYTMLKNHVLNEIRNNNSAVEKNYEIVQSAPEYEDELLIKIE
HHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHEEEEC
EQDMMSHFYQAIDHLPEQKRQVCLYKLKGNLSNQEIADKMNISVPTVKTHYAQAIKILRA
HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
HFERLFLFLLYLWNSSY
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SFFQKSIRSDEDLLTSLRQGSEDAFTVIYERYHKLLYVLAYKYLKSTYSSEDAVQQVFL
CHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KLWEARSLLMVNVNLRNYLYTMLKNHVLNEIRNNNSAVEKNYEIVQSAPEYEDELLIKIE
HHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHEEEEC
EQDMMSHFYQAIDHLPEQKRQVCLYKLKGNLSNQEIADKMNISVPTVKTHYAQAIKILRA
HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
HFERLFLFLLYLWNSSY
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA