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The map label for this gene is xerD [H]

Identifier: 150008734

GI number: 150008734

Start: 2506123

End: 2507229

Strand: Direct

Name: xerD [H]

Synonym: BDI_2124

Alternate gene names: 150008734

Gene position: 2506123-2507229 (Clockwise)

Preceding gene: 150008733

Following gene: 150008735

Centisome position: 52.09

GC content: 45.08

Gene sequence:

>1107_bases
ATGACACTTACATGCACCAACGTAACTTTGAGACAAAAGCCATTGCGTAACGACCGCATATCTCTTTATCTGGATTATTA
TCCTGCCATACGCAATCCTTATACGATGAAGATGAGTCGCCGGGAATTCCTCGGCATCTACATCTATGCCAAGCCTAAGA
ATGAGCAGCAAAGAATGTTCAATCAAGACATGTTGAACAAAGCAGAGGCTATCCGCTGTATCCGTGTCCAGTCGCTTATC
AATGAAGAATTCGGGTTCCTGGACAAGAACAAGCAAAAAGTCGATTTCCTTGCCTACTTCCGGACTAAGGCACGGGAAAA
GTATGAGAAATGGGATTGTGTTTACAACCACTTCGAGAAATTTGTCGGCGGCAAATGCACCTTTGGCGATGTCACCGTGG
AACTGTGCGAGAAGTTCAGGGATTACCTGCTCAAATGCAAACAGATCAATCATCCCAATGCTTACATCTCACGCAATTCG
GCAGCCGGTTATTATTCTACCTTCCGAGCCCTGTTGAAGATAGCCTATAAAGAAAAGATGTTGCGCGAGAACTTGAACGA
CTTTCTGGAAAAAATCGAATGGAAAGAAGTCAAGAAAGAGTATCTGACACTTGATGAAGTCAAAAAACTGGCAGCAACAC
CATGCAAGATTCCAGTCTTGAAACAGGCATCCCTGTTTGCCTGCATGACTGGCCTCCGTATCAGTGATATTCTGAAACTG
GACTGGCGCGATTTTGAGGTTGGCCCGGACCAAGGCTATTACATCCGTATCTGTACCGAGAAAACAGAAACCGAGGCCAC
ACTCCCCATCAGTCAGGAGGCACTGGAGTTGTGCGGCGAATGGAGTACCGGAAAAGTCTTCAAAGGCTTAACCCGCTCCA
TGACCCATCATCCCTTGAAACAATGGATTACCGAAGCCGGAATCAGAAAACACATAACCTTCCACTGCTTTCGTCATTCA
TACGCCGTCATCCAAATCTCTTTAGGTACAGACATTTACACAGTGTCGAAGATGCTAACGCATAAGAATGTCACCACTAC
TCAAATCTATGCTGATTTGGTTAATTCCAAGAAGAGAGAGACGGCGAATAAGATTTCACTGAAATAG

Upstream 100 bases:

>100_bases
TAGAATGAGCCGAAAGTTATTTTCCGGTGATAAATACCACCATTAGAACACCTATTTTATTTGCAACAAAAACAAGTATT
AATCAAAAAACAATATAGCT

Downstream 100 bases:

>100_bases
TATAAAGCTCTGTAACGTAAGACGAGTCCGACATGTGGTTAAAACCTAGTTGGACTCTTCTTTTTTATTCTATTGTGGCA
TAGATGGTATAGAAATAAGT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MTLTCTNVTLRQKPLRNDRISLYLDYYPAIRNPYTMKMSRREFLGIYIYAKPKNEQQRMFNQDMLNKAEAIRCIRVQSLI
NEEFGFLDKNKQKVDFLAYFRTKAREKYEKWDCVYNHFEKFVGGKCTFGDVTVELCEKFRDYLLKCKQINHPNAYISRNS
AAGYYSTFRALLKIAYKEKMLRENLNDFLEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQASLFACMTGLRISDILKL
DWRDFEVGPDQGYYIRICTEKTETEATLPISQEALELCGEWSTGKVFKGLTRSMTHHPLKQWITEAGIRKHITFHCFRHS
YAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANKISLK

Sequences:

>Translated_368_residues
MTLTCTNVTLRQKPLRNDRISLYLDYYPAIRNPYTMKMSRREFLGIYIYAKPKNEQQRMFNQDMLNKAEAIRCIRVQSLI
NEEFGFLDKNKQKVDFLAYFRTKAREKYEKWDCVYNHFEKFVGGKCTFGDVTVELCEKFRDYLLKCKQINHPNAYISRNS
AAGYYSTFRALLKIAYKEKMLRENLNDFLEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQASLFACMTGLRISDILKL
DWRDFEVGPDQGYYIRICTEKTETEATLPISQEALELCGEWSTGKVFKGLTRSMTHHPLKQWITEAGIRKHITFHCFRHS
YAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANKISLK
>Mature_367_residues
TLTCTNVTLRQKPLRNDRISLYLDYYPAIRNPYTMKMSRREFLGIYIYAKPKNEQQRMFNQDMLNKAEAIRCIRVQSLIN
EEFGFLDKNKQKVDFLAYFRTKAREKYEKWDCVYNHFEKFVGGKCTFGDVTVELCEKFRDYLLKCKQINHPNAYISRNSA
AGYYSTFRALLKIAYKEKMLRENLNDFLEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQASLFACMTGLRISDILKLD
WRDFEVGPDQGYYIRICTEKTETEATLPISQEALELCGEWSTGKVFKGLTRSMTHHPLKQWITEAGIRKHITFHCFRHSY
AVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANKISLK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43229; Mature: 43098

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTCTNVTLRQKPLRNDRISLYLDYYPAIRNPYTMKMSRREFLGIYIYAKPKNEQQRMF
CEEEEECCEEECCCCCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEEEECCCCHHHHHH
NQDMLNKAEAIRCIRVQSLINEEFGFLDKNKQKVDFLAYFRTKAREKYEKWDCVYNHFEK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVGGKCTFGDVTVELCEKFRDYLLKCKQINHPNAYISRNSAAGYYSTFRALLKIAYKEKM
HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
LRENLNDFLEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQASLFACMTGLRISDILKL
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHEE
DWRDFEVGPDQGYYIRICTEKTETEATLPISQEALELCGEWSTGKVFKGLTRSMTHHPLK
CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QWITEAGIRKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRE
HHHHHHHHHHHHHHEEEECCEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCHHHH
TANKISLK
HHHHCCCC
>Mature Secondary Structure 
TLTCTNVTLRQKPLRNDRISLYLDYYPAIRNPYTMKMSRREFLGIYIYAKPKNEQQRMF
EEEEECCEEECCCCCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEEEECCCCHHHHHH
NQDMLNKAEAIRCIRVQSLINEEFGFLDKNKQKVDFLAYFRTKAREKYEKWDCVYNHFEK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVGGKCTFGDVTVELCEKFRDYLLKCKQINHPNAYISRNSAAGYYSTFRALLKIAYKEKM
HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
LRENLNDFLEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQASLFACMTGLRISDILKL
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHEE
DWRDFEVGPDQGYYIRICTEKTETEATLPISQEALELCGEWSTGKVFKGLTRSMTHHPLK
CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QWITEAGIRKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRE
HHHHHHHHHHHHHHEEEECCEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCHHHH
TANKISLK
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 10537218; 10498718 [H]