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The map label for this gene is fecI [C]

Identifier: 150008684

GI number: 150008684

Start: 2453178

End: 2453660

Strand: Direct

Name: fecI [C]

Synonym: BDI_2074

Alternate gene names: 150008684

Gene position: 2453178-2453660 (Clockwise)

Preceding gene: 150008678

Following gene: 150008685

Centisome position: 50.99

GC content: 38.51

Gene sequence:

>483_bases
ATGAAAATTTCTCATGGGGATTCCTACTTGGCAGAGGAAATGGTACAAACTGTATTTCTTAAAGTATGGAAAAATCGAGA
ACAATTAGACCCAAAACTGTCTTTTGGAGCCTATTTATGTACGATAGCAAAAAACTTATTAACTAACCATTACCAACATA
AAATGATGGAGATTCTCTATATAGAACAACAAATAGACCACCCCGGAACTCCTTATGCCAGAGGTACGGACGAGGTCGTA
GAATATCATCTCCTAGAAGAATTCGTTGATTCTTTAATACAACAAATGCCCGAAGGAAGGCAAAGAATTTATAAACTAAG
CAGACAATCCCACCTATCCAACCGGGAGATAGCAGACCAATTGCAGATATCAGAGAATACCGTGGAATCCCAACTGACCA
AAGCCATCTCCTTTCTACGCAAAAGGTTAAAAGACCAATACGACCTAGGACTTTTAGCTTTAAGTTGCCTCCTCAATAGT
TAA

Upstream 100 bases:

>100_bases
GGGAGAGAGGAACAAGCATATTGAGAACCTTAGAAAGGGTAATCGTTCATCTTTTGAATATCTTTACACGGTTTGGAGTG
GCAAATTATATAATTTTGTC

Downstream 100 bases:

>100_bases
CGAATACTAAATCCGCAGGATGCGATAACGGAAACTTCCCTGTCATTTGTATACTGAATAAAGACAGAGGAAAATGGAAA
GAAACGATTACATACATATA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Transcriptional Regulator LuxR Family; Sigma Factor; RNA Polymerase Sigma-W Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Type RNA Polymerase; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase ECF Sigma Factor

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MKISHGDSYLAEEMVQTVFLKVWKNREQLDPKLSFGAYLCTIAKNLLTNHYQHKMMEILYIEQQIDHPGTPYARGTDEVV
EYHLLEEFVDSLIQQMPEGRQRIYKLSRQSHLSNREIADQLQISENTVESQLTKAISFLRKRLKDQYDLGLLALSCLLNS

Sequences:

>Translated_160_residues
MKISHGDSYLAEEMVQTVFLKVWKNREQLDPKLSFGAYLCTIAKNLLTNHYQHKMMEILYIEQQIDHPGTPYARGTDEVV
EYHLLEEFVDSLIQQMPEGRQRIYKLSRQSHLSNREIADQLQISENTVESQLTKAISFLRKRLKDQYDLGLLALSCLLNS
>Mature_160_residues
MKISHGDSYLAEEMVQTVFLKVWKNREQLDPKLSFGAYLCTIAKNLLTNHYQHKMMEILYIEQQIDHPGTPYARGTDEVV
EYHLLEEFVDSLIQQMPEGRQRIYKLSRQSHLSNREIADQLQISENTVESQLTKAISFLRKRLKDQYDLGLLALSCLLNS

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18674; Mature: 18674

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISHGDSYLAEEMVQTVFLKVWKNREQLDPKLSFGAYLCTIAKNLLTNHYQHKMMEILY
CCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEQQIDHPGTPYARGTDEVVEYHLLEEFVDSLIQQMPEGRQRIYKLSRQSHLSNREIADQ
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHH
LQISENTVESQLTKAISFLRKRLKDQYDLGLLALSCLLNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKISHGDSYLAEEMVQTVFLKVWKNREQLDPKLSFGAYLCTIAKNLLTNHYQHKMMEILY
CCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEQQIDHPGTPYARGTDEVVEYHLLEEFVDSLIQQMPEGRQRIYKLSRQSHLSNREIADQ
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHH
LQISENTVESQLTKAISFLRKRLKDQYDLGLLALSCLLNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA