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The map label for this gene is yijO [C]

Identifier: 150008537

GI number: 150008537

Start: 2284233

End: 2285069

Strand: Reverse

Name: yijO [C]

Synonym: BDI_1923

Alternate gene names: 150008537

Gene position: 2285069-2284233 (Counterclockwise)

Preceding gene: 150008538

Following gene: 150008536

Centisome position: 47.49

GC content: 43.49

Gene sequence:

>837_bases
ATGGAATATATTTTTAATACTCGCTTAAGAGGTAATATAGCGTTGACCGATTCGTATCACACGAACCTTGCTTTGCAGAA
AGATAATACGCTTTACAAGTTTATTTGGGTACAAAGCGGTTCGTTGCGACTGGAGATCGATCACGTACCGACTACCTTAG
TGAAAGGTGAGATTATTCCCTTGACTCCTTTGCACCATATCGAGTTCAAGGCGATCAATGGCGAGTACTTGACCCTTCTG
TTTAACAGTAACTTCTATTGTATTTTCGGACATGACAATGAGGTGTCGTGTAATGGTTTTCTTTTTAACGGGACTTCCAA
TGTGATGCAATTGAAATTGAGCGAATCCCAAGTTGCCTCTTTGCGCGATATCACCGACAGCCTAACGAGTGAGTACGCCA
TAAAGGATAATTTGCAAGAGGAGATGCTGCGTATCTTACTGAAACGTTTCATTATTTTGTGCACCCGGATCGCACGTGAG
AAGTTTTCGGTAAGCCCGGAACGGGAAAAGGCGTTCGATATGGTTCGCCAGTTCTATGTATTGGTAGATAACCATTTTAA
GGAAAAGAAGATGGTCCAAGATTATGCGGATATGCTGCATCGCTCCCCAAAAACCCTATCCAACCTTTTTACGACTTGCG
GATTACCTTCTCCGTTACGGATCATTCACGAACGAATTGAGGCTGAGGCCAAACGATTGCTATTATATAGCCAGAAGAGC
GCGAAGGAAATCACGGAGATCTTGGGCTTCGAGGATCAAGCCACATTCAGCCGTTTTTTCAAGAAAATGACGGGAGAAAG
CGTCTCTGAGTACCGGAAAAGAGAGAAACGGGAATAA

Upstream 100 bases:

>100_bases
GGATTAGTGACGCGGAAGTTTGCTGGGAATAAAGTGAACTTTCGCTTTTTGTTTATATAATATTGTTATCTTTATCCGTC
TTAAAATCCGGAAGAAATCT

Downstream 100 bases:

>100_bases
TTGCTAACTCATCCGGTAAAATCGCCATTTACGGGATAGGTGTTTCTACCGATCTTTGCGGTATAAGTTCAATACTATAA
AACAAATAATAAGATGAAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulator PobR; Transcriptional Regulator Arac Family; Regulator Of 4HPA-Hydroxylase Operon; Bacterial Regulatory Helix-Turn-Helix Protein; Transcriptional Regulator AraC Family Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MEYIFNTRLRGNIALTDSYHTNLALQKDNTLYKFIWVQSGSLRLEIDHVPTTLVKGEIIPLTPLHHIEFKAINGEYLTLL
FNSNFYCIFGHDNEVSCNGFLFNGTSNVMQLKLSESQVASLRDITDSLTSEYAIKDNLQEEMLRILLKRFIILCTRIARE
KFSVSPEREKAFDMVRQFYVLVDNHFKEKKMVQDYADMLHRSPKTLSNLFTTCGLPSPLRIIHERIEAEAKRLLLYSQKS
AKEITEILGFEDQATFSRFFKKMTGESVSEYRKREKRE

Sequences:

>Translated_278_residues
MEYIFNTRLRGNIALTDSYHTNLALQKDNTLYKFIWVQSGSLRLEIDHVPTTLVKGEIIPLTPLHHIEFKAINGEYLTLL
FNSNFYCIFGHDNEVSCNGFLFNGTSNVMQLKLSESQVASLRDITDSLTSEYAIKDNLQEEMLRILLKRFIILCTRIARE
KFSVSPEREKAFDMVRQFYVLVDNHFKEKKMVQDYADMLHRSPKTLSNLFTTCGLPSPLRIIHERIEAEAKRLLLYSQKS
AKEITEILGFEDQATFSRFFKKMTGESVSEYRKREKRE
>Mature_278_residues
MEYIFNTRLRGNIALTDSYHTNLALQKDNTLYKFIWVQSGSLRLEIDHVPTTLVKGEIIPLTPLHHIEFKAINGEYLTLL
FNSNFYCIFGHDNEVSCNGFLFNGTSNVMQLKLSESQVASLRDITDSLTSEYAIKDNLQEEMLRILLKRFIILCTRIARE
KFSVSPEREKAFDMVRQFYVLVDNHFKEKKMVQDYADMLHRSPKTLSNLFTTCGLPSPLRIIHERIEAEAKRLLLYSQKS
AKEITEILGFEDQATFSRFFKKMTGESVSEYRKREKRE

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32458; Mature: 32458

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYIFNTRLRGNIALTDSYHTNLALQKDNTLYKFIWVQSGSLRLEIDHVPTTLVKGEIIP
CCCEECCCCCCCEEEEECCCCEEEEECCCCEEEEEEEECCCEEEEECCCCCHHHCCCEEE
LTPLHHIEFKAINGEYLTLLFNSNFYCIFGHDNEVSCNGFLFNGTSNVMQLKLSESQVAS
CCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCEEECEEEECCCCCEEEEEECHHHHHH
LRDITDSLTSEYAIKDNLQEEMLRILLKRFIILCTRIAREKFSVSPEREKAFDMVRQFYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LVDNHFKEKKMVQDYADMLHRSPKTLSNLFTTCGLPSPLRIIHERIEAEAKRLLLYSQKS
HHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHH
AKEITEILGFEDQATFSRFFKKMTGESVSEYRKREKRE
HHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MEYIFNTRLRGNIALTDSYHTNLALQKDNTLYKFIWVQSGSLRLEIDHVPTTLVKGEIIP
CCCEECCCCCCCEEEEECCCCEEEEECCCCEEEEEEEECCCEEEEECCCCCHHHCCCEEE
LTPLHHIEFKAINGEYLTLLFNSNFYCIFGHDNEVSCNGFLFNGTSNVMQLKLSESQVAS
CCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCEEECEEEECCCCCEEEEEECHHHHHH
LRDITDSLTSEYAIKDNLQEEMLRILLKRFIILCTRIAREKFSVSPEREKAFDMVRQFYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LVDNHFKEKKMVQDYADMLHRSPKTLSNLFTTCGLPSPLRIIHERIEAEAKRLLLYSQKS
HHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHH
AKEITEILGFEDQATFSRFFKKMTGESVSEYRKREKRE
HHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA