Click here to switch to the map view.

The map label for this gene is 150008520

Identifier: 150008520

GI number: 150008520

Start: 2262799

End: 2263056

Strand: Reverse

Name: 150008520

Synonym: BDI_1906

Alternate gene names: NA

Gene position: 2263056-2262799 (Counterclockwise)

Preceding gene: 150008533

Following gene: 150008519

Centisome position: 47.04

GC content: 33.72

Gene sequence:

>258_bases
ATGGATAAACAAGAGGCTGTGGAAGATAATGATCCTTATTCGATACTTAGTATTTTTGAAATAGAACGAATCACGGAAAA
TACGATAGAGGAATTACCAGATCAATGTAAATCCATTTTTAAATTGAGTCGTATAAATGGACTCAAGAACCAAGAGATCG
CAGATAAATTGGATATCTCCGTCCGTACAGTGGAAACACAGATATATAGAGCCCTTAAGATTTTGAAAAGTAGATTGAAA
GATTATCTGGTTTCTTGA

Upstream 100 bases:

>100_bases
GGAAAAAGGTTAAGCACAAACCTAAAAATAATGATTTTTTCAGGGTTCTGTAATTAGTTCTACCGGAACCATTGACATTC
CCCGATATGAAATATCAGAG

Downstream 100 bases:

>100_bases
AAAAATATAATACAAAAATCTATCAATCTTGTAAGTAGCACATCGTTTTGAAGTGTCATACATATAGAATCGAGAAAAAA
CAATGAAAGAATATATAAAA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MDKQEAVEDNDPYSILSIFEIERITENTIEELPDQCKSIFKLSRINGLKNQEIADKLDISVRTVETQIYRALKILKSRLK
DYLVS

Sequences:

>Translated_85_residues
MDKQEAVEDNDPYSILSIFEIERITENTIEELPDQCKSIFKLSRINGLKNQEIADKLDISVRTVETQIYRALKILKSRLK
DYLVS
>Mature_85_residues
MDKQEAVEDNDPYSILSIFEIERITENTIEELPDQCKSIFKLSRINGLKNQEIADKLDISVRTVETQIYRALKILKSRLK
DYLVS

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9917; Mature: 9917

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQEAVEDNDPYSILSIFEIERITENTIEELPDQCKSIFKLSRINGLKNQEIADKLDIS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VRTVETQIYRALKILKSRLKDYLVS
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKQEAVEDNDPYSILSIFEIERITENTIEELPDQCKSIFKLSRINGLKNQEIADKLDIS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
VRTVETQIYRALKILKSRLKDYLVS
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA