Click here to switch to the map view.

The map label for this gene is 150008505

Identifier: 150008505

GI number: 150008505

Start: 2248777

End: 2250315

Strand: Reverse

Name: 150008505

Synonym: BDI_1891

Alternate gene names: NA

Gene position: 2250315-2248777 (Counterclockwise)

Preceding gene: 150008506

Following gene: 150008501

Centisome position: 46.77

GC content: 49.12

Gene sequence:

>1539_bases
ATGGTTGGAATGTATATAATCATACCGATAGTAACCTTCATCATTGGTGGGTTGCTTGCGTGGCTGGGCATGCGTTTCCT
TCTGAAGTCGAAGTACGACTCCGTGCTTCAAGAGGCGGAGAAGGAGGCCGAGGTGATAAAGAAGAACAAGATGCTGGAAG
TAAAGGAGAAGTTTCTTCATTTGAAAGCGGACTTGGAAAAACAGGTATCACAGCGTAACGCTAAGATCCAGTCTGTCGAG
ACTAAATTGAAACAAAGAGAACTGACGATGAATCAACGTCAGGAAGAGTTACAGCGTAGGAATAACGAGGTAGAGGCTGT
AAAGGAGAATTTATCTTCTCAGTTGGAGTTGGTGGAGAAGAAGAAGCAAGATTTGGATAAACTTCATCAGAAGGAAGTGG
AGCATTTGGAGGCTATCTCCGGGTTGTCCGCCGAGGAAGCCAAAGAGCGTTTGATCGAGTCCTTAAAGGATGAGGCAAAG
ACGCAAGCCGCTTCTTACATCAACGAGATCGTCGAGGAGGCGAAGATGACCGCTAATAAGGAGGCGAAGAAGATCGTGAT
CCAGTCTATCCAACGGGTAGCGACGGAGACGGCTATCGAGAACTCTATTACCGTGTTCCATATTGAATCGGACGAGATCA
AAGGCCGTATCATCGGTCGTGAGGGACGTAATATCCGTGCTTTGGAGGCCGCTACCGGTATTGAGATCGTGGTGGATGAT
ACGCCTGAGGCTATCGTTCTTTCCGGATTCGATCCGGTTCGCCGTGAGATCGCTCGTTTGGCCTTGCATCAATTGGTACA
GGACGGACGTATCCATCCGGCTCGTATCGAGGAGGTGGTAACGAAGGTGAAGAAGCAAGTGGAAGACGAGGTCGTAGAGA
CTGGTAAGCGTACCGTGATCGATTTGGGTGTGCACGGTTTGCATCCGGAATTGATCCGTATGATCGGTAAGATGAAGTAT
CGTTCTTCTTATGGACAAAACTTGTTGCAACATGCTCGTGAGACGGCCAACCTTTGTGCCGTGATGGCTTCCGAGTTGGG
CTTGAACCCGAAGAAAGCGAAACGTGCCGGATTGTTACATGATATTGGTAAAGTGCCCGATGATGAGCCGGAATTGCCGC
ACGCTATCTTGGGTATGAAGCTTTGCGAGAAATATAAGGAGAAACCGGATATTTGCAACGCCGTAGGCGCTCACCACGAT
GAGGTGGAGATGCAGACGCTGTTGGCTCCGATCGTACAGGTTTGCGACGCTATTTCAGGTGCTCGTCCGGGAGCACGTCG
TGAGATCGTAGAGGCTTATATCAAGCGTTTGAATGATTTGGAACAATTGGCTTTATCGTATCCGGGTGTCGTCAAGACTT
ACGCTATCCAAGCGGGTAGAGAGTTGCGCGTCATCGTTGGCGCTGATAAGATTGACGATAAGGACACCGAGAACTTGTCC
GCTGAGATCGCTAAGAAGATTCAGGATGAGATGACTTATCCGGGACAGGTTAAGATCACGGTGATCCGTGAGACTCGTGC
GGTAAGCTACGCTAAGTAA

Upstream 100 bases:

>100_bases
ATTGTAAGAAGAGAGTTTCCGCACTGCTTTGCACGGTGAGACCGTGTGATGGTAGTGCTTTTTTTGTATATAAATAAATG
AATCTTAAATTATTAGTTAA

Downstream 100 bases:

>100_bases
GAATATTATTAATATAAATAAAAAAGGCCGGCTTGTGTAAGTCGGCCTTTTTTATATCTGTCGTTATCGATTTCCCAGAT
CGTCGTATAAAGTTTGTAAT

Product: phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MVGMYIIIPIVTFIIGGLLAWLGMRFLLKSKYDSVLQEAEKEAEVIKKNKMLEVKEKFLHLKADLEKQVSQRNAKIQSVE
TKLKQRELTMNQRQEELQRRNNEVEAVKENLSSQLELVEKKKQDLDKLHQKEVEHLEAISGLSAEEAKERLIESLKDEAK
TQAASYINEIVEEAKMTANKEAKKIVIQSIQRVATETAIENSITVFHIESDEIKGRIIGREGRNIRALEAATGIEIVVDD
TPEAIVLSGFDPVRREIARLALHQLVQDGRIHPARIEEVVTKVKKQVEDEVVETGKRTVIDLGVHGLHPELIRMIGKMKY
RSSYGQNLLQHARETANLCAVMASELGLNPKKAKRAGLLHDIGKVPDDEPELPHAILGMKLCEKYKEKPDICNAVGAHHD
EVEMQTLLAPIVQVCDAISGARPGARREIVEAYIKRLNDLEQLALSYPGVVKTYAIQAGRELRVIVGADKIDDKDTENLS
AEIAKKIQDEMTYPGQVKITVIRETRAVSYAK

Sequences:

>Translated_512_residues
MVGMYIIIPIVTFIIGGLLAWLGMRFLLKSKYDSVLQEAEKEAEVIKKNKMLEVKEKFLHLKADLEKQVSQRNAKIQSVE
TKLKQRELTMNQRQEELQRRNNEVEAVKENLSSQLELVEKKKQDLDKLHQKEVEHLEAISGLSAEEAKERLIESLKDEAK
TQAASYINEIVEEAKMTANKEAKKIVIQSIQRVATETAIENSITVFHIESDEIKGRIIGREGRNIRALEAATGIEIVVDD
TPEAIVLSGFDPVRREIARLALHQLVQDGRIHPARIEEVVTKVKKQVEDEVVETGKRTVIDLGVHGLHPELIRMIGKMKY
RSSYGQNLLQHARETANLCAVMASELGLNPKKAKRAGLLHDIGKVPDDEPELPHAILGMKLCEKYKEKPDICNAVGAHHD
EVEMQTLLAPIVQVCDAISGARPGARREIVEAYIKRLNDLEQLALSYPGVVKTYAIQAGRELRVIVGADKIDDKDTENLS
AEIAKKIQDEMTYPGQVKITVIRETRAVSYAK
>Mature_512_residues
MVGMYIIIPIVTFIIGGLLAWLGMRFLLKSKYDSVLQEAEKEAEVIKKNKMLEVKEKFLHLKADLEKQVSQRNAKIQSVE
TKLKQRELTMNQRQEELQRRNNEVEAVKENLSSQLELVEKKKQDLDKLHQKEVEHLEAISGLSAEEAKERLIESLKDEAK
TQAASYINEIVEEAKMTANKEAKKIVIQSIQRVATETAIENSITVFHIESDEIKGRIIGREGRNIRALEAATGIEIVVDD
TPEAIVLSGFDPVRREIARLALHQLVQDGRIHPARIEEVVTKVKKQVEDEVVETGKRTVIDLGVHGLHPELIRMIGKMKY
RSSYGQNLLQHARETANLCAVMASELGLNPKKAKRAGLLHDIGKVPDDEPELPHAILGMKLCEKYKEKPDICNAVGAHHD
EVEMQTLLAPIVQVCDAISGARPGARREIVEAYIKRLNDLEQLALSYPGVVKTYAIQAGRELRVIVGADKIDDKDTENLS
AEIAKKIQDEMTYPGQVKITVIRETRAVSYAK

Specific function: Catalyzes the hydrolysis of both 2',3'-cyclic AMP and 2',3'-cyclic GMP into 3'-AMP and 3'-GMP, respectively, at the 3'- terminal of RNA

COG id: COG1418

COG function: function code R; Predicted HD superfamily hydrolase

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CNPD_PARD8 (A6LD62)

Other databases:

- EMBL:   CP000140
- RefSeq:   YP_001303248.1
- ProteinModelPortal:   A6LD62
- SMR:   A6LD62
- STRING:   A6LD62
- GeneID:   5307041
- GenomeReviews:   CP000140_GR
- KEGG:   pdi:BDI_1891
- eggNOG:   COG1418
- HOGENOM:   HBG734610
- OMA:   HPGRIEE
- ProtClustDB:   PRK12704
- BioCyc:   PDIS435591:BDI_1891-MONOMER
- HAMAP:   MF_00335
- InterPro:   IPR017705
- InterPro:   IPR022711
- InterPro:   IPR004087
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR003607
- InterPro:   IPR006675
- SMART:   SM00471
- SMART:   SM00322
- TIGRFAMs:   TIGR00277
- TIGRFAMs:   TIGR03319

Pfam domain/function: PF12072 DUF3552; PF00013 KH_1

EC number: =3.1.4.16

Molecular weight: Translated: 57588; Mature: 57588

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf4a2994)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGMYIIIPIVTFIIGGLLAWLGMRFLLKSKYDSVLQEAEKEAEVIKKNKMLEVKEKFLH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKADLEKQVSQRNAKIQSVETKLKQRELTMNQRQEELQRRNNEVEAVKENLSSQLELVEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KKQDLDKLHQKEVEHLEAISGLSAEEAKERLIESLKDEAKTQAASYINEIVEEAKMTANK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EAKKIVIQSIQRVATETAIENSITVFHIESDEIKGRIIGREGRNIRALEAATGIEIVVDD
HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCCCCCEEEEECCCCCEEEECC
TPEAIVLSGFDPVRREIARLALHQLVQDGRIHPARIEEVVTKVKKQVEDEVVETGKRTVI
CCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
DLGVHGLHPELIRMIGKMKYRSSYGQNLLQHARETANLCAVMASELGLNPKKAKRAGLLH
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DIGKVPDDEPELPHAILGMKLCEKYKEKPDICNAVGAHHDEVEMQTLLAPIVQVCDAISG
HHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
ARPGARREIVEAYIKRLNDLEQLALSYPGVVKTYAIQAGRELRVIVGADKIDDKDTENLS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHH
AEIAKKIQDEMTYPGQVKITVIRETRAVSYAK
HHHHHHHHHHCCCCCCEEEEEEECHHHHCCCH
>Mature Secondary Structure
MVGMYIIIPIVTFIIGGLLAWLGMRFLLKSKYDSVLQEAEKEAEVIKKNKMLEVKEKFLH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKADLEKQVSQRNAKIQSVETKLKQRELTMNQRQEELQRRNNEVEAVKENLSSQLELVEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KKQDLDKLHQKEVEHLEAISGLSAEEAKERLIESLKDEAKTQAASYINEIVEEAKMTANK
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EAKKIVIQSIQRVATETAIENSITVFHIESDEIKGRIIGREGRNIRALEAATGIEIVVDD
HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCCCCCEEEEECCCCCEEEECC
TPEAIVLSGFDPVRREIARLALHQLVQDGRIHPARIEEVVTKVKKQVEDEVVETGKRTVI
CCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
DLGVHGLHPELIRMIGKMKYRSSYGQNLLQHARETANLCAVMASELGLNPKKAKRAGLLH
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DIGKVPDDEPELPHAILGMKLCEKYKEKPDICNAVGAHHDEVEMQTLLAPIVQVCDAISG
HHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
ARPGARREIVEAYIKRLNDLEQLALSYPGVVKTYAIQAGRELRVIVGADKIDDKDTENLS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHH
AEIAKKIQDEMTYPGQVKITVIRETRAVSYAK
HHHHHHHHHHCCCCCCEEEEEEECHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA