| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
Click here to switch to the map view.
The map label for this gene is yhhX [C]
Identifier: 150008484
GI number: 150008484
Start: 2223028
End: 2224191
Strand: Direct
Name: yhhX [C]
Synonym: BDI_1870
Alternate gene names: 150008484
Gene position: 2223028-2224191 (Clockwise)
Preceding gene: 150008483
Following gene: 150008485
Centisome position: 46.2
GC content: 46.13
Gene sequence:
>1164_bases ATGAATAGAAAAGAATTCTTTAAAGTATCTGCCGCAGCAAGTCTAGCGTCACTACTATCCCCTCTTTCCGCCTATGCGGA GAAATTCGAGTCGGAAGGTAAAAAGGTGAAAGTAGCCGTTATCGGTTGCGGAAGTGTATCTACCCAATATTTTCCCCATA TATCGAAATGCCCGTATGTAGAAATCGTGGCTTGTTGCGATATCAAACCGGATCGTGCTCAAAAGGCGGCCAAGCAATAT AATATACCTAAATGGTACAAGCATATCGATGATATGCTTAGCGGTTCCAAGTTCGACTTGATGCTTACATTGACCGATAT GCAGGTTCACGGAGAGTTGAACCGTAAGGCTTTGATGGCGGGAAGAAATGTCTGGAGCGAGAAACCTTTGGCGAATTCCT ATAAGGAAGGCAAAGAATTATACGATCTCGCTACGAGCAAGGGACTTCGTATCTGGGGTGCGCCTGCCGTTGTAAACAGT CCTCAATTTGCCTTTATGGCCGAACAAATCAATAAAGGAACCCTAGGTAATCTGGCATGTGCGCACGGACATTACGGACA TGAAGGCCCTTCTTGGTCCGCTTTCTTCTACGAACCGCTAGGTGGCAGTATGCCCGACTTAGGAGTCTATAACATCGCTA CCCTAACCGGATTATTGGGACCGGCTAAATCCGTTGTTGCCATGACTACAATCGTAACCCCGGAGAGAACCGTAGACGAT AAGGGCAAAATCAAAGTTCGAGAAGAAGATAATGCCATGATTATCATGGAACACGAAAAGGGAGTCCTTTCTCATATCGA GTGTGGTTTCAATTATTTCGATCCATACGGACATTTAGGTAAAGGACAGGAGAAAGCGACGATCTCCTTATACGGTTCCC ACGGCAATATGCATATGGTAGGTTACGACTGGGCACCAAACGGGGTGGACTTATCGACGATGGATCATCCGGTACCCCAA CGTTTCGTTCCGGACACCAATGGCTATGTTTGGCAAGAAGGAGCTTCCGATATCAGCAAACACATGGCATTAAACACGGA ACCACGTATAAATGTCGAGCATGCGTTACACGTATTAGAGATTATCGAGGCCGCCCGAAAATCACAAGCTACAGGTCAAC GCATCCAGCTTGTATCGAAGTTTCCTTGGCCGATGGTAAAATAA
Upstream 100 bases:
>100_bases TACCACCGGTAAACTTTGTTTTCAGGACCATGGAAGTAAAGTATATTTCAAGAATGTGAAGATTAAGGATTTAGACTAAT TGTATTAAGAAATCAATGCC
Downstream 100 bases:
>100_bases ATTAAGAAGTCTTAGTAGTGAAAAGAACGGGACATTTAATATATTTGTTCCTGTAAATACCAGAGAAACATGAGGAAGAT AAGTGAAATTTTATGCTGCG
Product: putative dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MNRKEFFKVSAAASLASLLSPLSAYAEKFESEGKKVKVAVIGCGSVSTQYFPHISKCPYVEIVACCDIKPDRAQKAAKQY NIPKWYKHIDDMLSGSKFDLMLTLTDMQVHGELNRKALMAGRNVWSEKPLANSYKEGKELYDLATSKGLRIWGAPAVVNS PQFAFMAEQINKGTLGNLACAHGHYGHEGPSWSAFFYEPLGGSMPDLGVYNIATLTGLLGPAKSVVAMTTIVTPERTVDD KGKIKVREEDNAMIIMEHEKGVLSHIECGFNYFDPYGHLGKGQEKATISLYGSHGNMHMVGYDWAPNGVDLSTMDHPVPQ RFVPDTNGYVWQEGASDISKHMALNTEPRINVEHALHVLEIIEAARKSQATGQRIQLVSKFPWPMVK
Sequences:
>Translated_387_residues MNRKEFFKVSAAASLASLLSPLSAYAEKFESEGKKVKVAVIGCGSVSTQYFPHISKCPYVEIVACCDIKPDRAQKAAKQY NIPKWYKHIDDMLSGSKFDLMLTLTDMQVHGELNRKALMAGRNVWSEKPLANSYKEGKELYDLATSKGLRIWGAPAVVNS PQFAFMAEQINKGTLGNLACAHGHYGHEGPSWSAFFYEPLGGSMPDLGVYNIATLTGLLGPAKSVVAMTTIVTPERTVDD KGKIKVREEDNAMIIMEHEKGVLSHIECGFNYFDPYGHLGKGQEKATISLYGSHGNMHMVGYDWAPNGVDLSTMDHPVPQ RFVPDTNGYVWQEGASDISKHMALNTEPRINVEHALHVLEIIEAARKSQATGQRIQLVSKFPWPMVK >Mature_387_residues MNRKEFFKVSAAASLASLLSPLSAYAEKFESEGKKVKVAVIGCGSVSTQYFPHISKCPYVEIVACCDIKPDRAQKAAKQY NIPKWYKHIDDMLSGSKFDLMLTLTDMQVHGELNRKALMAGRNVWSEKPLANSYKEGKELYDLATSKGLRIWGAPAVVNS PQFAFMAEQINKGTLGNLACAHGHYGHEGPSWSAFFYEPLGGSMPDLGVYNIATLTGLLGPAKSVVAMTTIVTPERTVDD KGKIKVREEDNAMIIMEHEKGVLSHIECGFNYFDPYGHLGKGQEKATISLYGSHGNMHMVGYDWAPNGVDLSTMDHPVPQ RFVPDTNGYVWQEGASDISKHMALNTEPRINVEHALHVLEIIEAARKSQATGQRIQLVSKFPWPMVK
Specific function: Unknown
COG id: COG0673
COG function: function code R; Predicted dehydrogenases and related proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gfo/idh/mocA family [H]
Homologues:
Organism=Escherichia coli, GI1789848, Length=186, Percent_Identity=26.3440860215054, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000683 - InterPro: IPR004104 [H]
Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 42780; Mature: 42780
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRKEFFKVSAAASLASLLSPLSAYAEKFESEGKKVKVAVIGCGSVSTQYFPHISKCPYV CCHHHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHCCCCCCCCCE EIVACCDIKPDRAQKAAKQYNIPKWYKHIDDMLSGSKFDLMLTLTDMQVHGELNRKALMA EEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHH GRNVWSEKPLANSYKEGKELYDLATSKGLRIWGAPAVVNSPQFAFMAEQINKGTLGNLAC CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCHHHHHHHHCCCCCCCEEE AHGHYGHEGPSWSAFFYEPLGGSMPDLGVYNIATLTGLLGPAKSVVAMTTIVTPERTVDD ECCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHEEEEEEECCCCCCCC KGKIKVREEDNAMIIMEHEKGVLSHIECGFNYFDPYGHLGKGQEKATISLYGSHGNMHMV CCCEEEEECCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEE GYDWAPNGVDLSTMDHPVPQRFVPDTNGYVWQEGASDISKHMALNTEPRINVEHALHVLE EECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHH IIEAARKSQATGQRIQLVSKFPWPMVK HHHHHHHHCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MNRKEFFKVSAAASLASLLSPLSAYAEKFESEGKKVKVAVIGCGSVSTQYFPHISKCPYV CCHHHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHCCCCCCCCCE EIVACCDIKPDRAQKAAKQYNIPKWYKHIDDMLSGSKFDLMLTLTDMQVHGELNRKALMA EEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHH GRNVWSEKPLANSYKEGKELYDLATSKGLRIWGAPAVVNSPQFAFMAEQINKGTLGNLAC CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCHHHHHHHHCCCCCCCEEE AHGHYGHEGPSWSAFFYEPLGGSMPDLGVYNIATLTGLLGPAKSVVAMTTIVTPERTVDD ECCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHEEEEEEECCCCCCCC KGKIKVREEDNAMIIMEHEKGVLSHIECGFNYFDPYGHLGKGQEKATISLYGSHGNMHMV CCCEEEEECCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEE GYDWAPNGVDLSTMDHPVPQRFVPDTNGYVWQEGASDISKHMALNTEPRINVEHALHVLE EECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHH IIEAARKSQATGQRIQLVSKFPWPMVK HHHHHHHHCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]