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The map label for this gene is mmsR [H]

Identifier: 150008482

GI number: 150008482

Start: 2221168

End: 2222061

Strand: Reverse

Name: mmsR [H]

Synonym: BDI_1868

Alternate gene names: 150008482

Gene position: 2222061-2221168 (Counterclockwise)

Preceding gene: 150008488

Following gene: 150008471

Centisome position: 46.18

GC content: 43.4

Gene sequence:

>894_bases
ATGGCGAAAATAAAGCATGGTTTTTCCGGTCAGCGATTGATTGTCTATCCTTTCTACGTTATAGAACAAGCGTTGAACAA
CCCGTTAGTCGCGGACTTGGTCGTACACTCTATGGGGTATTTTCCGAAGGCGGAAAGCCATTATATTGATCGTGCGTCCG
GTTGTGGAGAGTACCTTTTAATTTATTGCACCAAAGGAGAGGGTTGGTACGTGTTGGATGGAAAACGATATGTCGTACCC
GAGAATCATTTTTTCATCCTCCCGGCAGAGAAGCCCCATCAATATGGTTCGAGCGAGCATGATCCTTGGTATATTTATTG
GGCACATTTTAAAGGGAAAAAGGCGAAGTATATCAGCGATCAACTGCAAGGGGTGATCCCGATCGACATGGATGATAATT
CCCGTATCGGCGATCGTATCGCCTTCTTCGATGAACTATTGAACGTGTTGGAGAGCGGGACGGATGAGGCTACGGTTAAT
TATGTCAATTTAAGTTTCAATCATTTGATCGCCTCTTTCCTCTATGTGAAGACGTATAGGGAGGCTAAATTCTCCAAAAG
CAAGGCGGAGAATACGTTCTTTATTAGTTTGGCGACCCACTTCATGACGGAGAATCTGGAAAATAAATTGACATTAAAGG
AATTGGCCTCTCATTTCGGCTATTCGGAATCTTATATGTACAGGCTTTTCTTCAAGGAAACCGGCTATGCGCCGATGAAT
TATTTCTTACATATGAAAATAGACCGGGCTTGCCAGCTATTATTACATACAAATATGAAAATCAATCAGGTCGCCTTGAA
ACTGGGCTTTGACGATCCCTACTATTTCAGCCGTATCTTTAAGAAGATAGTAGGTACATCGCCCAAGGATTACCGGCACT
CGTTGCCGAAGTGA

Upstream 100 bases:

>100_bases
GCAAAAATACTGCACATAAAGGATTTGGATAATAGAGTATCTAGCTAAAAAAAATGGATTATCTTTGCGTTATTCAGTAA
CCATCTAAAAGTTCTGGTTT

Downstream 100 bases:

>100_bases
GATATTTACGATGAACCTAAACGGGAGCTTAGGGCTGGCGGTATTTATTCCGGTCGGCTTCCGTTATTTCCCGGATTACA
CGGCAGGGATTGCCGGCGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MAKIKHGFSGQRLIVYPFYVIEQALNNPLVADLVVHSMGYFPKAESHYIDRASGCGEYLLIYCTKGEGWYVLDGKRYVVP
ENHFFILPAEKPHQYGSSEHDPWYIYWAHFKGKKAKYISDQLQGVIPIDMDDNSRIGDRIAFFDELLNVLESGTDEATVN
YVNLSFNHLIASFLYVKTYREAKFSKSKAENTFFISLATHFMTENLENKLTLKELASHFGYSESYMYRLFFKETGYAPMN
YFLHMKIDRACQLLLHTNMKINQVALKLGFDDPYYFSRIFKKIVGTSPKDYRHSLPK

Sequences:

>Translated_297_residues
MAKIKHGFSGQRLIVYPFYVIEQALNNPLVADLVVHSMGYFPKAESHYIDRASGCGEYLLIYCTKGEGWYVLDGKRYVVP
ENHFFILPAEKPHQYGSSEHDPWYIYWAHFKGKKAKYISDQLQGVIPIDMDDNSRIGDRIAFFDELLNVLESGTDEATVN
YVNLSFNHLIASFLYVKTYREAKFSKSKAENTFFISLATHFMTENLENKLTLKELASHFGYSESYMYRLFFKETGYAPMN
YFLHMKIDRACQLLLHTNMKINQVALKLGFDDPYYFSRIFKKIVGTSPKDYRHSLPK
>Mature_296_residues
AKIKHGFSGQRLIVYPFYVIEQALNNPLVADLVVHSMGYFPKAESHYIDRASGCGEYLLIYCTKGEGWYVLDGKRYVVPE
NHFFILPAEKPHQYGSSEHDPWYIYWAHFKGKKAKYISDQLQGVIPIDMDDNSRIGDRIAFFDELLNVLESGTDEATVNY
VNLSFNHLIASFLYVKTYREAKFSKSKAENTFFISLATHFMTENLENKLTLKELASHFGYSESYMYRLFFKETGYAPMNY
FLHMKIDRACQLLLHTNMKINQVALKLGFDDPYYFSRIFKKIVGTSPKDYRHSLPK

Specific function: Regulatory protein for the mmsAB operon. Activates the transcription of the mmsAB genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787987, Length=244, Percent_Identity=23.3606557377049, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI226510985, Length=233, Percent_Identity=24.4635193133047, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34577; Mature: 34446

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIKHGFSGQRLIVYPFYVIEQALNNPLVADLVVHSMGYFPKAESHYIDRASGCGEYLL
CCCCCCCCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCEEE
IYCTKGEGWYVLDGKRYVVPENHFFILPAEKPHQYGSSEHDPWYIYWAHFKGKKAKYISD
EEEECCCCEEEECCEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCHHHHHH
QLQGVIPIDMDDNSRIGDRIAFFDELLNVLESGTDEATVNYVNLSFNHLIASFLYVKTYR
HCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHH
EAKFSKSKAENTFFISLATHFMTENLENKLTLKELASHFGYSESYMYRLFFKETGYAPMN
HHHHCCCCCCCEEEEEEHHHHHHHHHCCCEEHHHHHHHCCCCHHHEEEEEEECCCCCCEE
YFLHMKIDRACQLLLHTNMKINQVALKLGFDDPYYFSRIFKKIVGTSPKDYRHSLPK
EEEEEEHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure 
AKIKHGFSGQRLIVYPFYVIEQALNNPLVADLVVHSMGYFPKAESHYIDRASGCGEYLL
CCCCCCCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCEEE
IYCTKGEGWYVLDGKRYVVPENHFFILPAEKPHQYGSSEHDPWYIYWAHFKGKKAKYISD
EEEECCCCEEEECCEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCHHHHHH
QLQGVIPIDMDDNSRIGDRIAFFDELLNVLESGTDEATVNYVNLSFNHLIASFLYVKTYR
HCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHH
EAKFSKSKAENTFFISLATHFMTENLENKLTLKELASHFGYSESYMYRLFFKETGYAPMN
HHHHCCCCCCCEEEEEEHHHHHHHHHCCCEEHHHHHHHCCCCHHHEEEEEEECCCCCCEE
YFLHMKIDRACQLLLHTNMKINQVALKLGFDDPYYFSRIFKKIVGTSPKDYRHSLPK
EEEEEEHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339433; 10984043 [H]