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The map label for this gene is nusB [H]

Identifier: 150008472

GI number: 150008472

Start: 2211800

End: 2212726

Strand: Direct

Name: nusB [H]

Synonym: BDI_1858

Alternate gene names: 150008472

Gene position: 2211800-2212726 (Clockwise)

Preceding gene: 150008469

Following gene: 150008473

Centisome position: 45.97

GC content: 39.37

Gene sequence:

>927_bases
ATGATCAACAGAATTTTAATCCGCATTAAAGTTTTACAGATAGTATACTCTTACTATCAAAACGGAAACGGTGACCTCAA
AGTTGCGGAAAACGAATTGCTTTTCAGCCTTCAGAAGTCATATGACTTATATTATTATTTCTTACTCCTAATTATCGAAG
TTACCAACCTGCAAAGAAGGATCCTTGACACCCGGAAGTGCAAATACATGCCTACCGACGAGGAGTTAAACCCGAATACA
CGCTTCATAGACAATCGTTTCGTCGCTCAATTAGCGGAAAACGATACGTTGAAAAAGTATGTAGACGAGCAAGGTCTCTC
ATGGAGCAACGACGAGGAGTTCATTAAGAACGTATTGGATACGATCCTAAGTTCTGAGATTTACGCCGAATACTTGAAAA
ACGAAGAAGACTCGTACGAGACGGATCGTGAGTTCTGGCGCCAGATCTTCAAGAAAATAATCTGTGGAAACGAGATGATA
GAGGAATATCTGGAAGATAAAAGCATCTACTGGAATGACGATATCGAGATCGTAGAGACTTTCGCCTTGAAGACTATCAA
GAAATTCGAGGAGAAGAAAGGTAGCAAACAAGCCTTATTGCCAATGTTCAAGGATTTGGAAGACAAGGCTTTCGCAATCA
AGTTATTCCGTCAAAGTTTGTTGAAAGGTAAGGAATATCGTGAACGCATCGACAAACATATGAAGAATTGGGAAACCGAA
CGTATCGCCAATATGGACTTGATCATCATGCAAGTCGCCTTAGCCGAGATTTTATCGTTCCCGACCATTCCCATCAACGT
TACCTTAAATGAATATATCGATGCCGCAAAGTATTATAGTACACCTAAAAGCGGAACATTCATTAACGGAATTCTGGATT
CAATAGTCAACGAATTAAAAAAAGAGAAGTTATTGCTCAAAGATTAA

Upstream 100 bases:

>100_bases
ATATCATCTAACACATATAAAATTAAGTAAATCCGGATTCTTTTATGGAAAAAACAACTACCTTTGCAGCCTAATTTATA
ATAAGAAGTTCCTTCAAACG

Downstream 100 bases:

>100_bases
TTATTATCATTACATTTGTGCATATCATTATTGATATTAACTTGTAAAACGATTATTATAGTATGAACTTACTCAGTATT
TTACTTCAAACTCCAGCTGG

Product: putative N utilization substance protein

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MINRILIRIKVLQIVYSYYQNGNGDLKVAENELLFSLQKSYDLYYYFLLLIIEVTNLQRRILDTRKCKYMPTDEELNPNT
RFIDNRFVAQLAENDTLKKYVDEQGLSWSNDEEFIKNVLDTILSSEIYAEYLKNEEDSYETDREFWRQIFKKIICGNEMI
EEYLEDKSIYWNDDIEIVETFALKTIKKFEEKKGSKQALLPMFKDLEDKAFAIKLFRQSLLKGKEYRERIDKHMKNWETE
RIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFINGILDSIVNELKKEKLLLKD

Sequences:

>Translated_308_residues
MINRILIRIKVLQIVYSYYQNGNGDLKVAENELLFSLQKSYDLYYYFLLLIIEVTNLQRRILDTRKCKYMPTDEELNPNT
RFIDNRFVAQLAENDTLKKYVDEQGLSWSNDEEFIKNVLDTILSSEIYAEYLKNEEDSYETDREFWRQIFKKIICGNEMI
EEYLEDKSIYWNDDIEIVETFALKTIKKFEEKKGSKQALLPMFKDLEDKAFAIKLFRQSLLKGKEYRERIDKHMKNWETE
RIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFINGILDSIVNELKKEKLLLKD
>Mature_308_residues
MINRILIRIKVLQIVYSYYQNGNGDLKVAENELLFSLQKSYDLYYYFLLLIIEVTNLQRRILDTRKCKYMPTDEELNPNT
RFIDNRFVAQLAENDTLKKYVDEQGLSWSNDEEFIKNVLDTILSSEIYAEYLKNEEDSYETDREFWRQIFKKIICGNEMI
EEYLEDKSIYWNDDIEIVETFALKTIKKFEEKKGSKQALLPMFKDLEDKAFAIKLFRQSLLKGKEYRERIDKHMKNWETE
RIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFINGILDSIVNELKKEKLLLKD

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 36609; Mature: 36609

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINRILIRIKVLQIVYSYYQNGNGDLKVAENELLFSLQKSYDLYYYFLLLIIEVTNLQRR
CCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILDTRKCKYMPTDEELNPNTRFIDNRFVAQLAENDTLKKYVDEQGLSWSNDEEFIKNVLD
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHH
TILSSEIYAEYLKNEEDSYETDREFWRQIFKKIICGNEMIEEYLEDKSIYWNDDIEIVET
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEECCCHHHHHH
FALKTIKKFEEKKGSKQALLPMFKDLEDKAFAIKLFRQSLLKGKEYRERIDKHMKNWETE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHH
RIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFINGILDSIVNELK
HHHCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
KEKLLLKD
HHHCCCCC
>Mature Secondary Structure
MINRILIRIKVLQIVYSYYQNGNGDLKVAENELLFSLQKSYDLYYYFLLLIIEVTNLQRR
CCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILDTRKCKYMPTDEELNPNTRFIDNRFVAQLAENDTLKKYVDEQGLSWSNDEEFIKNVLD
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHH
TILSSEIYAEYLKNEEDSYETDREFWRQIFKKIICGNEMIEEYLEDKSIYWNDDIEIVET
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEECCCHHHHHH
FALKTIKKFEEKKGSKQALLPMFKDLEDKAFAIKLFRQSLLKGKEYRERIDKHMKNWETE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHH
RIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFINGILDSIVNELK
HHHCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
KEKLLLKD
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA